RchiOBHm_Chr6g0252461

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000102
Physical Location & Seq
Forward (+)
7623758 .. 7625563
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22637

Sequence Viewer

Length: 768 bp
ATGTTAATTTTGGGTTCAAACATAGGAACAGACATAGATGTGGACGAGAATTACAGATCACTCAAAACAAATTGTAAGGGTGAGTATGTCAATGTGGATCCAAACAATGCGTTATGTGTAGATGATCTTGATCAATACAATGAGGTGAGTGGAAAGAAATTAAAAGTACTGGTTTGTGCAAGTAATGTGGGAATGTGGGATCAAGAAGTACTAACTTTACATTTGAATATGCAGTGTATCGCAGACATAAACACACCCCAAATATTGGAACCTTATTGTACTGTTTCTTCTCCAAATCCACTAGGGTCAGAGTGGGATTCAGACGATCTCAATCAAGACTCTGTAAATCTCCTTTCTCTTCCTCAACTTTCCAGGCCATGGTGTCGAGGAAGCATCAAGGACTGGCAGAGATGCAATAAGACCTTATCAGCTTCATATATATCTGATGTTTCTTCTAGTCTGGTTTATCATCAGAACCTCATAAAAAAAAGCTATAGAGTTCTGATATACAGGTGCATAGAATATATTATTTTGAGGCGAACAATATGTTCTATCCTTAATTATTTCCAATTTGCCTCAACCATAAACTTATCTGTTAACAGTGGTGATCATGACATGGTGGTTCCATATTTGGGTACTATTGCTTGGATAGAATCTCTAAACCTGACAGTTGACAGTAGTTGGAAACCATGGTTCGTGAATGGACAAATCGCAGGGGAGGGGGTCACACAGCTCCAGAGTACAAACCTGAAGAATGTCTTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

255

Amino Acids

28.72

Weight (kDa)

4.84

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 192 - 243 5.9e-09 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 265, 378
AclWI GGATC 3 cut(s) 92, 105, 207
AfaI GTAC 5 cut(s) 168, 210, 280, 637, 742
AfiI CCNNNNNNNGG 3 cut(s) 265, 378, 632
AgsI TTSAA 2 cut(s) 18, 226
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 3 cut(s) 431, 492, 733
AluI AGCT 3 cut(s) 431, 492, 733
AlwI GGATC 3 cut(s) 92, 105, 207
AoxI GGCC 1 cut(s) 374
AsuHPI GGTGA 3 cut(s) 92, 157, 617
BamHI GGATCC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BciT130I CCWGG 1 cut(s) 373
BclI TGATCA 2 cut(s) 130, 607
BfaI CTAG 2 cut(s) 302, 456
BfmI CTRYAG 1 cut(s) 493
BmcAI AGTACT 2 cut(s) 168, 210
Bme1390I CCNGG 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 99, 270, 624
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 401, 402
BpmI CTGGAG 1 cut(s) 719
BsaBI GATNNNNATC 2 cut(s) 129, 330
BsaJI CCNNGG 2 cut(s) 377, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 378, 632
Bse1I ACTGG 2 cut(s) 174, 407
Bse8I GATNNNNATC 2 cut(s) 129, 330
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 377, 689
BseJI GATNNNNATC 2 cut(s) 129, 330
BseLI CCNNNNNNNGG 3 cut(s) 265, 378, 632
BseNI ACTGG 2 cut(s) 174, 407
BshFI GGCC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 265, 378, 632
BsnI GGCC 1 cut(s) 376
Bsp143I GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
Bsp19I CCATGG 2 cut(s) 377, 689
BspANI GGCC 1 cut(s) 376
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 3 cut(s) 99, 270, 624
BspPI GGATC 3 cut(s) 92, 105, 207
BsrI ACTGG 2 cut(s) 174, 407
BssECI CCNNGG 2 cut(s) 377, 689
BssMI GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
BssT1I CCWWGG 2 cut(s) 377, 689
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 4 cut(s) 283, 602, 670, 677
Bst6I CTCTTC 1 cut(s) 363
BstDSI CCRYGG 2 cut(s) 377, 689
BstKTI GATC 7 cut(s) 59, 100, 127, 133, 202, 328, 610
BstMBI GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 376
BtgI CCRYGG 2 cut(s) 377, 689
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 239, 607
CciI TCATGA 1 cut(s) 610
Csp6I GTAC 5 cut(s) 167, 209, 279, 636, 741
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 4 cut(s) 378, 611, 616, 690
CviJI RGCY 4 cut(s) 376, 431, 492, 733
CviKI_1 RGCY 4 cut(s) 376, 431, 492, 733
CviQI GTAC 5 cut(s) 167, 209, 279, 636, 741
DpnI GATC 7 cut(s) 58, 99, 126, 132, 201, 327, 609
DpnII GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 377, 689
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 2 cut(s) 377, 689
ErhI CCWWGG 2 cut(s) 377, 689
FaeI CATG 4 cut(s) 381, 614, 619, 693
FalI AAGNNNNNCTT 1 cut(s) 743
FatI CATG 4 cut(s) 377, 610, 615, 689
FbaI TGATCA 2 cut(s) 130, 607
FspBI CTAG 2 cut(s) 302, 456
GsuI CTGGAG 1 cut(s) 719
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 4 cut(s) 381, 614, 619, 693
HincII GTYRAC 2 cut(s) 598, 673
HindII GTYRAC 2 cut(s) 598, 673
HinfI GANTC 3 cut(s) 317, 338, 653
HpaI GTTAAC 1 cut(s) 598
HphI GGTGA 3 cut(s) 92, 157, 617
Hpy166II GTNNAC 3 cut(s) 43, 598, 673
Hpy188I TCNGA 5 cut(s) 310, 322, 445, 474, 504
Hpy188III TCNNGA 6 cut(s) 128, 203, 335, 611, 697, 736
Hpy8I GTNNAC 3 cut(s) 43, 598, 673
HpyCH4III ACNGT 4 cut(s) 283, 602, 670, 677
HpyCH4V TGCA 4 cut(s) 179, 232, 414, 516
Hsp92II CATG 4 cut(s) 381, 614, 619, 693
Ksp22I TGATCA 2 cut(s) 130, 607
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
LmnI GCTCC 1 cut(s) 738
LweI GCATC 2 cut(s) 401, 402
MaeI CTAG 2 cut(s) 302, 456
MaeIII GTNAC 1 cut(s) 724
MalI GATC 7 cut(s) 58, 99, 126, 132, 201, 327, 609
MboI GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
MboII GAAGA 4 cut(s) 279, 350, 444, 763
MflI RGATCY 1 cut(s) 97
MluCI AATT 6 cut(s) 6, 49, 70, 158, 559, 569
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 662
MnlI CCTC 7 cut(s) 136, 372, 380, 488, 528, 586, 712
MseI TTAA 4 cut(s) 5, 161, 558, 597
MslI CAYNNNNRTG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
NcoI CCATGG 2 cut(s) 377, 689
NdeII GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
NlaIII CATG 4 cut(s) 381, 614, 619, 693
NlaIV GGNNCC 3 cut(s) 99, 270, 624
NmuCI GTSAC 1 cut(s) 724
PagI TCATGA 1 cut(s) 610
PfeI GAWTC 2 cut(s) 317, 653
PflMI CCANNNNNTGG 2 cut(s) 265, 378
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 99, 270, 624
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 5 cut(s) 168, 210, 280, 637, 742
RsaNI GTAC 5 cut(s) 167, 209, 279, 636, 741
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 4 cut(s) 5, 161, 558, 597
Sau3AI GATC 7 cut(s) 56, 97, 124, 130, 199, 325, 607
ScaI AGTACT 2 cut(s) 168, 210
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 373
SfaNI GCATC 2 cut(s) 401, 402
SfcI CTRYAG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 6 cut(s) 6, 49, 70, 158, 559, 569
SspI AATATT 1 cut(s) 264
SspMI CTAG 2 cut(s) 302, 456
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 2 cut(s) 377, 689
TaaI ACNGT 4 cut(s) 283, 602, 670, 677
TaqI TCGA 1 cut(s) 385
TasI AATT 6 cut(s) 6, 49, 70, 158, 559, 569
TatI WGTACW 4 cut(s) 166, 208, 278, 740
TfiI GAWTC 2 cut(s) 317, 653
Tru1I TTAA 4 cut(s) 5, 161, 558, 597
Tru9I TTAA 4 cut(s) 5, 161, 558, 597
TscAI CASTG 2 cut(s) 239, 607
TseFI GTSAC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 2 cut(s) 239, 607
Van91I CCANNNNNTGG 2 cut(s) 265, 378
XspI CTAG 2 cut(s) 302, 456
ZrmI AGTACT 2 cut(s) 168, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.