Rmu_ssc0000007.1_g000002

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000007.1
OG0000102
Physical Location & Seq
Reverse (-)
12916 .. 16247
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000007.1_g000002.1.cds

Sequence Viewer

Length: 921 bp
atgaatccatattcatggaccaaggtggccaacataatctttatagatgcaccagttggtgctgggttttcatactctacaacctgggaagggtactatacttccgatacaaaatcagctgcacagacctatactttcttaagaaagtggttatatgcacacccaagttttcagggaaatcaactgtacattggtggtgactcatattcaggacttattgttcccattcttcttaagaatatactagaaggtttagagtctgggttaaggccaagaatgcaactccaaggatacttgcttggaaatccagtttcagattcttttattgatgtaaatgagagaatcccatatgttcaccgagtgtcactcatttcagatgaaatctatgaggctgctaaaactaattgcagtggggactatgtcaatgtggaacttaacaatacactttgtgttactgctcttcaaaaaattaaagattgtcttctacaaataaatcttgcacaaattttggaaccccaatgtgcttttgcatctggtaaaacaactgagttggatgggatcttagagatcgagaagcaagtactatggattacctcctttcagagtctaagctacctgaatttcattgccggtatgtcgtccattgactatgtcaccacatcttttgctgcttccctggccctcgcaggcagcgaggtcatttatatttccaagatggctggcggatctcaatgtcaagtttcacagtcctatctactagctaggcctctggccgccaaaccagcgacactgaacaatctgaggcactttttaaagtgtgtttggggtgatatggacttcaagattcaggaacgaacacaaaatagatttgtgctggttttttatctactccaggatagaaacaaggttttgagaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

6.32

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 723, 774
AclWI GGATC 2 cut(s) 566, 733
AcoI YGGCCR 2 cut(s) 27, 771
AcsI RAATTY 2 cut(s) 504, 619
AdeI CACNNNGTG 2 cut(s) 361, 449
AfaI GTAC 3 cut(s) 95, 188, 582
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 2 cut(s) 139, 233
AgsI TTSAA 2 cut(s) 464, 841
AjnI CCWGG 3 cut(s) 83, 675, 891
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 3 cut(s) 119, 612, 761
AluI AGCT 3 cut(s) 119, 612, 761
AlwI GGATC 2 cut(s) 566, 733
AoxI GGCC 5 cut(s) 27, 269, 678, 764, 771
ApeKI GCWGC 4 cut(s) 119, 392, 668, 690
ApoI RAATTY 2 cut(s) 504, 619
AspS9I GGNCC 2 cut(s) 18, 679
AsuHPI GGTGA 4 cut(s) 209, 347, 646, 839
AvaII GGWCC 1 cut(s) 18
BalI TGGCCA 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 106, 379, 655, 702
BccI CCATC 2 cut(s) 548, 709
BciT130I CCWGG 3 cut(s) 85, 677, 893
BciVI GTATCC 1 cut(s) 284
BfaI CTAG 3 cut(s) 245, 758, 762
BfrI CTTAAG 2 cut(s) 139, 233
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 5 cut(s) 120, 393, 669, 691, 774
BlsI GCNGC 5 cut(s) 121, 394, 670, 692, 775
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 3 cut(s) 85, 677, 893
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 18, 679
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 85, 677, 893
BmsI GCATC 2 cut(s) 37, 539
BpiI GAAGAC 1 cut(s) 473
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpmI CTGGAG 1 cut(s) 875
BsaJI CCNNGG 4 cut(s) 21, 84, 286, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 2 cut(s) 53, 308
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 3 cut(s) 85, 677, 893
BseDI CCNNGG 4 cut(s) 21, 84, 286, 675
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 537, 791
BseNI ACTGG 2 cut(s) 53, 308
BseXI GCAGC 4 cut(s) 106, 379, 655, 702
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 5 cut(s) 29, 271, 680, 766, 773
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 5 cut(s) 29, 271, 680, 766, 773
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 558, 567, 725
BspACI CCGC 2 cut(s) 723, 774
BspANI GGCC 5 cut(s) 29, 271, 680, 766, 773
BspCNI CTCAG 2 cut(s) 538, 792
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 2 cut(s) 566, 733
BspQI GCTCTTC 1 cut(s) 465
BspTI CTTAAG 2 cut(s) 139, 233
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 2 cut(s) 53, 308
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 4 cut(s) 21, 84, 286, 675
BssMI GATC 3 cut(s) 558, 567, 725
BssT1I CCWWGG 2 cut(s) 21, 286
Bst2UI CCWGG 3 cut(s) 85, 677, 893
Bst4CI ACNGT 2 cut(s) 186, 747
Bst6I CTCTTC 1 cut(s) 465
BstAFI CTTAAG 2 cut(s) 139, 233
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 688, 721
BstDEI CTNAG 4 cut(s) 546, 562, 608, 800
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 3 cut(s) 561, 570, 728
BstMBI GATC 3 cut(s) 558, 567, 725
BstMWI GCNNNNNNNGC 3 cut(s) 277, 677, 782
BstNI CCWGG 3 cut(s) 85, 677, 893
BstSCI CCNGG 3 cut(s) 83, 675, 891
BstV1I GCAGC 4 cut(s) 106, 379, 655, 702
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 2 cut(s) 558, 725
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 2 cut(s) 558, 725
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 5 cut(s) 29, 271, 680, 766, 773
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 415, 788
Cac8I GCNNGC 2 cut(s) 688, 721
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 18, 679
Csp6I GTAC 3 cut(s) 94, 187, 581
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 1 cut(s) 15
CviQI GTAC 3 cut(s) 94, 187, 581
DdeI CTNAG 4 cut(s) 546, 562, 608, 800
DpnI GATC 3 cut(s) 560, 569, 727
DpnII GATC 3 cut(s) 558, 567, 725
DraI TTTAAA 1 cut(s) 813
DraIII CACNNNGTG 2 cut(s) 361, 449
EaeI YGGCCR 2 cut(s) 27, 771
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 21, 286
Eco147I AGGCCT 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 83, 675, 891
EcoT14I CCWWGG 2 cut(s) 21, 286
ErhI CCWWGG 2 cut(s) 21, 286
FaeI CATG 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FaqI GGGAC 1 cut(s) 428
FatI CATG 1 cut(s) 14
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 5 cut(s) 120, 393, 669, 691, 774
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 5 cut(s) 120, 393, 669, 691, 774
FspBI CTAG 3 cut(s) 245, 758, 762
GluI GCNGC 5 cut(s) 120, 393, 669, 691, 774
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 875
HaeIII GGCC 5 cut(s) 29, 271, 680, 766, 773
HapII CCGG 1 cut(s) 630
Hin1II CATG 1 cut(s) 18
HinfI GANTC 7 cut(s) 4, 200, 257, 317, 342, 604, 844
HpaII CCGG 1 cut(s) 630
HphI GGTGA 4 cut(s) 209, 347, 646, 839
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 106, 316, 376, 603, 801
Hpy188III TCNNGA 4 cut(s) 210, 571, 841, 848
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 83, 242
HpyCH4III ACNGT 2 cut(s) 186, 747
HpyCH4V TGCA 7 cut(s) 50, 122, 158, 280, 408, 500, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 677, 782
HpyF3I CTNAG 4 cut(s) 546, 562, 608, 800
Hsp92II CATG 1 cut(s) 18
Kzo9I GATC 3 cut(s) 558, 567, 725
LguI GCTCTTC 1 cut(s) 465
Lsp1109I GCAGC 4 cut(s) 106, 379, 655, 702
LweI GCATC 2 cut(s) 37, 539
MaeI CTAG 3 cut(s) 245, 758, 762
MaeIII GTNAC 4 cut(s) 197, 363, 451, 652
MalI GATC 3 cut(s) 560, 569, 727
MboI GATC 3 cut(s) 558, 567, 725
MboII GAAGA 3 cut(s) 221, 452, 473
MflI RGATCY 2 cut(s) 558, 725
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 403, 468, 504, 619
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 3 cut(s) 194, 266, 613
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 7 cut(s) 382, 604, 688, 692, 777, 795, 908
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 6 cut(s) 140, 234, 266, 435, 471, 812
MslI CAYNNNNRTG 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 2 cut(s) 139, 233
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 3 cut(s) 85, 677, 893
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 3 cut(s) 85, 677, 893
MwoI GCNNNNNNNGC 3 cut(s) 277, 677, 782
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 558, 567, 725
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 3 cut(s) 197, 363, 652
PceI AGGCCT 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 4, 317, 342, 844
PflFI GACNNNGTC 2 cut(s) 419, 650
PfoI TCCNGGA 1 cut(s) 891
PkrI GCNGC 5 cut(s) 121, 394, 670, 692, 775
PleI GAGTC 3 cut(s) 194, 265, 612
PpsI GAGTC 3 cut(s) 194, 265, 612
Psp6I CCWGG 3 cut(s) 83, 675, 891
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 3 cut(s) 83, 675, 891
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 2 cut(s) 18, 679
PsuI RGATCY 2 cut(s) 558, 725
PsyI GACNNNGTC 2 cut(s) 419, 650
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 95, 188, 582
RsaNI GTAC 3 cut(s) 94, 187, 581
RseI CAYNNNNRTG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 6 cut(s) 140, 234, 266, 435, 471, 812
SatI GCNGC 5 cut(s) 120, 393, 669, 691, 774
Sau3AI GATC 3 cut(s) 558, 567, 725
Sau96I GGNCC 2 cut(s) 18, 679
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 3 cut(s) 194, 266, 613
ScrFI CCNGG 3 cut(s) 85, 677, 893
SfaNI GCATC 2 cut(s) 37, 539
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 139, 233
SmoI CTYRAG 2 cut(s) 139, 233
Sse9I AATT 4 cut(s) 403, 468, 504, 619
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 2 cut(s) 723, 774
SspMI CTAG 3 cut(s) 245, 758, 762
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 3 cut(s) 83, 675, 891
StyI CCWWGG 2 cut(s) 21, 286
TaaI ACNGT 2 cut(s) 186, 747
TaqI TCGA 1 cut(s) 570
TasI AATT 4 cut(s) 403, 468, 504, 619
TatI WGTACW 2 cut(s) 186, 580
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 4 cut(s) 4, 317, 342, 844
Tru1I TTAA 6 cut(s) 140, 234, 266, 435, 471, 812
Tru9I TTAA 6 cut(s) 140, 234, 266, 435, 471, 812
TscAI CASTG 2 cut(s) 415, 795
TseFI GTSAC 3 cut(s) 197, 363, 652
TseI GCWGC 4 cut(s) 119, 392, 668, 690
Tsp45I GTSAC 3 cut(s) 197, 363, 652
TspDTI ATGAA 4 cut(s) 17, 60, 393, 613
TspRI CASTG 2 cut(s) 415, 795
Tth111I GACNNNGTC 2 cut(s) 419, 650
Vha464I CTTAAG 2 cut(s) 139, 233
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 2 cut(s) 504, 619
XspI CTAG 3 cut(s) 245, 758, 762
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.