Rh6DG040600

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
4353354 .. 4356811
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG040600.1

Sequence Viewer

Length: 807 bp
ATGAAGGATTCTGAGAGGTACATCATGACCATCACCATGTTGCAACAAGTACTTGTTCTGGTGGTTCTTTTTAACGTTGTTTCATCAACTTCCATCATCAAGACGCTACCAGGCTTCTCCGGTGACCTCCCCTTCAAACTCGAAACTGGGTATGTTGGAGTAGGTGACTTGGATGATGTGCAGCTATTCTATTACTTCATTGAATCCGAGGGTAGTCCTGAGTATGACCCTCTTGTGCTTTGGCTCACTGGTGGTCCTGGTTGTTCTGGCTTTTCTGCTCTTGTCTATGAAAATATAGGTCCACTATCATTTGACCCTGCAAATTCCACTGGCAACAAGCCACAGTTGATGTTGAACCCATACTCATGGACAAAGGTCGCCAACATTATATTCTTAGATGCACCTGTGGGTACTGGTTACTCATATGCAAAAACTTGGGAAGGATACAGCAATATGAGTGACACATTATCAGCTGCAGAGACTTATGAATTTCTCAGAAAGTGGTTTATGGATCACCCCAAGTTCCTCGAAAATGCACTCTATCTTGCCGGAGATTCTTATTCGGGCATTGTTCTTCCTATTATTGTTCAGGAAATATCTGATGGTAATGAAGATGGACGTCACCCACCAATGAATATCCAAGGATATGTGCTTGGTAATCCAGGAACAGACATAGATGTCGATGAGAATTACAGAGTGCCATTTGCTTTCAGAAAAGCGCTTATATCAGATGAACTATACGAGGTGCAACACGCTAACACCCTTAAAATTTTGTTTGTTTCTTCTAGGTTGCATTTAGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

268

Amino Acids

29.92

Weight (kDa)

4.44

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 249 3.3e-73 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 677
AatII GACGTC 1 cut(s) 622
AclI AACGTT 1 cut(s) 75
AclWI GGATC 1 cut(s) 519
AcsI RAATTY 3 cut(s) 322, 488, 768
AcyI GRCGYC 1 cut(s) 619
AfaI GTAC 3 cut(s) 20, 51, 412
AfeI AGCGCT 1 cut(s) 720
AgsI TTSAA 3 cut(s) 136, 203, 355
AjnI CCWGG 3 cut(s) 109, 256, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 184, 473
AluI AGCT 2 cut(s) 184, 473
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 519
Aor51HI AGCGCT 1 cut(s) 720
ApeKI GCWGC 2 cut(s) 181, 473
ApoI RAATTY 3 cut(s) 322, 488, 768
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 254, 299
AsuHPI GGTGA 5 cut(s) 25, 134, 176, 506, 614
AvaII GGWCC 2 cut(s) 254, 299
BbvI GCAGC 2 cut(s) 193, 460
BccI CCATC 4 cut(s) 38, 101, 596, 608
BciT130I CCWGG 3 cut(s) 111, 258, 663
BciVI GTATCC 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 722
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 2 cut(s) 182, 474
BlsI GCNGC 2 cut(s) 183, 475
BmcAI AGTACT 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 111, 258, 663
Bme18I GGWCC 2 cut(s) 254, 299
BmgT120I GGNCC 2 cut(s) 254, 299
BmrFI CCNGG 3 cut(s) 111, 258, 663
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 156
BoxI GACNNNNGTC 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 207, 640
BsaWI WCCGGW 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 151, 253, 334, 418
BseBI CCWGG 3 cut(s) 111, 258, 663
BseDI CCNNGG 2 cut(s) 207, 640
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 210, 508
BseNI ACTGG 4 cut(s) 151, 253, 334, 418
BseXI GCAGC 2 cut(s) 193, 460
BsgI GTGCAG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 120, 549
BsmAI GTCTC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 511
BspCNI CTCAG 3 cut(s) 4, 211, 507
BspHI TCATGA 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 1 cut(s) 519
BsrI ACTGG 4 cut(s) 151, 253, 334, 418
BssECI CCNNGG 2 cut(s) 207, 640
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 1 cut(s) 619
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 3 cut(s) 111, 258, 663
Bst4CI ACNGT 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 12, 219, 394, 494
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 511
BstNI CCWGG 3 cut(s) 111, 258, 663
BstPAI GACNNNNGTC 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 109, 256, 661
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 193, 460
BstXI CCANNNNNNTGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 437
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 246, 327
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 254, 299
CseI GACGC 1 cut(s) 112
Csp6I GTAC 3 cut(s) 19, 50, 411
CviAII CATG 3 cut(s) 25, 37, 366
CviJI RGCY 6 cut(s) 114, 184, 244, 270, 340, 473
CviKI_1 RGCY 6 cut(s) 114, 184, 244, 270, 340, 473
CviQI GTAC 3 cut(s) 19, 50, 411
DdeI CTNAG 4 cut(s) 12, 219, 394, 494
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
Eco130I CCWWGG 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 254, 299
Eco47III AGCGCT 1 cut(s) 720
Eco91I GGTNACC 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 109, 256, 661
EcoT14I CCWWGG 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 3 cut(s) 28, 40, 369
FatI CATG 3 cut(s) 24, 36, 365
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 182, 474
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 182, 474
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 720
GluI GCNGC 2 cut(s) 182, 474
HaeII RGCGCY 1 cut(s) 722
HapII CCGG 2 cut(s) 120, 549
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 721
Hin1I GRCGYC 1 cut(s) 619
Hin1II CATG 3 cut(s) 28, 40, 369
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HinfI GANTC 3 cut(s) 8, 203, 554
HpaII CCGG 2 cut(s) 120, 549
HphI GGTGA 5 cut(s) 25, 134, 176, 506, 614
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 6 cut(s) 13, 208, 497, 601, 713, 730
Hpy188III TCNNGA 4 cut(s) 25, 100, 218, 590
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 142, 434
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 75, 619
HpyCH4V TGCA 9 cut(s) 43, 181, 320, 401, 428, 476, 536, 748, 793
HpyF3I CTNAG 4 cut(s) 12, 219, 394, 494
HpySE526I ACGT 2 cut(s) 75, 619
Hsp92I GRCGYC 1 cut(s) 619
Hsp92II CATG 3 cut(s) 28, 40, 369
HspAI GCGC 1 cut(s) 719
Kzo9I GATC 1 cut(s) 511
Lsp1109I GCAGC 2 cut(s) 193, 460
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 786
MaeII ACGT 2 cut(s) 75, 619
MaeIII GTNAC 5 cut(s) 122, 164, 416, 458, 620
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 3 cut(s) 566, 623, 774
MluCI AATT 4 cut(s) 322, 488, 688, 768
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 6 cut(s) 9, 137, 202, 240, 536, 736
MseI TTAA 2 cut(s) 72, 765
MslI CAYNNNNRTG 2 cut(s) 35, 364
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 120, 549
MspR9I CCNGG 3 cut(s) 111, 258, 663
MvaI CCWGG 3 cut(s) 111, 258, 663
NdeI CATATG 1 cut(s) 424
NdeII GATC 1 cut(s) 511
NlaIII CATG 3 cut(s) 28, 40, 369
NmuCI GTSAC 4 cut(s) 122, 164, 458, 620
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 3 cut(s) 8, 203, 554
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 2 cut(s) 183, 475
PshAI GACNNNNGTC 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 3 cut(s) 109, 256, 661
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 3 cut(s) 109, 256, 661
PspPI GGNCC 2 cut(s) 254, 299
PstI CTGCAG 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 3 cut(s) 20, 51, 412
RsaNI GTAC 3 cut(s) 19, 50, 411
RseI CAYNNNNRTG 2 cut(s) 35, 364
SaqAI TTAA 2 cut(s) 72, 765
SatI GCNGC 2 cut(s) 182, 474
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 254, 299
ScaI AGTACT 1 cut(s) 51
ScrFI CCNGG 3 cut(s) 111, 258, 663
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 254, 299
SmiMI CAYNNNNRTG 2 cut(s) 35, 364
Sse9I AATT 4 cut(s) 322, 488, 688, 768
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 109, 256, 661
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 2 cut(s) 78, 622
TaqI TCGA 3 cut(s) 141, 528, 681
TasI AATT 4 cut(s) 322, 488, 688, 768
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 3 cut(s) 8, 203, 554
Tru1I TTAA 2 cut(s) 72, 765
Tru9I TTAA 2 cut(s) 72, 765
TscAI CASTG 2 cut(s) 253, 334
TseFI GTSAC 4 cut(s) 122, 164, 458, 620
TseI GCWGC 2 cut(s) 181, 473
Tsp45I GTSAC 4 cut(s) 122, 164, 458, 620
TspDTI ATGAA 8 cut(s) 17, 72, 187, 303, 501, 624, 647, 747
TspRI CASTG 2 cut(s) 253, 334
VpaK11BI GGWCC 2 cut(s) 254, 299
XapI RAATTY 3 cut(s) 322, 488, 768
XspI CTAG 1 cut(s) 786
ZraI GACGTC 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.