Rw4G021320

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000102
Physical Location & Seq
Reverse (-)
45974516 .. 45975150
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021320.1

Sequence Viewer

Length: 360 bp
ATGCAACTCCAAGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGAATATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTACAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGGTAGAACAACTGAGTTGGATGGGATCTTAGAGCTCGAGAAGCAAGTACTATGGATTACCTCCTTTCAGAGTCTAAGCTACCTGAATTGCATTGCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

119

Amino Acids

13.27

Weight (kDa)

4.45

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 104 5.2e-13 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 228
AdeI CACNNNGTG 2 cut(s) 85, 173
AfaI GTAC 1 cut(s) 306
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 2 cut(s) 292, 336
AluI AGCT 2 cut(s) 292, 336
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 293
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 8
BcnI CCSGG 1 cut(s) 355
BfuI GTATCC 1 cut(s) 8
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpuMI CCSGG 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 348
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 270, 286, 332
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 3 cut(s) 116, 292, 336
CviKI_1 RGCY 3 cut(s) 116, 292, 336
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 270, 286, 332
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraIII CACNNNGTG 2 cut(s) 85, 173
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 10
FaiI YATR 5 cut(s) 73, 75, 111, 144, 310
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FauNDI CATATG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HapII CCGG 1 cut(s) 354
HinfI GANTC 3 cut(s) 41, 66, 328
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 40, 100, 327
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 4, 132, 224, 254, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 3 cut(s) 270, 286, 332
Kzo9I GATC 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 189
LpnPI CCDG 3 cut(s) 45, 243, 353
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 87, 175
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 176, 197
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 4 cut(s) 127, 192, 228, 343
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 2 cut(s) 106, 328
MseI TTAA 2 cut(s) 159, 195
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 355
NdeI CATATG 1 cut(s) 73
NdeII GATC 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 41, 66
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 159, 195
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 282
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 1 cut(s) 294
SetI ASST 4 cut(s) 294, 320, 338, 342
SfaNI GCATC 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 4 cut(s) 127, 192, 228, 343
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 1 cut(s) 10
TaqI TCGA 1 cut(s) 294
TasI AATT 4 cut(s) 127, 192, 228, 343
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 2 cut(s) 41, 66
Tru1I TTAA 2 cut(s) 159, 195
Tru9I TTAA 2 cut(s) 159, 195
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.