Rmu_sc0001762.1_g000019

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001762.1
OG0000102
Physical Location & Seq
Reverse (-)
46535 .. 50322
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001762.1_g000019.1.cds

Sequence Viewer

Length: 876 bp
atgattaagattgatcaccccaggttcctctataatccactctacgttggtggagattcctatggaggcaaggttgttccgataatagttcaagaaatatcgaatggtaatgaagatggacttgaaccacagatgaatctcaaagtacatgttcttccatttctatttcaaatcctcaattctattccaaattgcaaaggcgagtatgtgaatgtggatccgaacaatgcattatgtgtgtacgatcttgaacgtgtcaacgagtgcatagaagacataaaccttcaacaaatattggaacctaaatgtaatccccaatccccaaaaccaatagacagaacgtggcatccgcaagaattcagtaaaaaggatcctattgatctcctccttccatcatctcaattagtttctatgccatggtgtcgggctaccaattatatattatctcaaatttgggcgaacgataaaactgttcaatctgctcttcacgttgtacagggaagcatcaaggaatgggtgagatgtaatgacagcttaactagttcatatgtacaagatgtttcttctactgttggttatcaccaaaacctcacaacaaaaggctatagagttctgatttatagtggtgatcatgacatgagtattccatatgtgggcactactacctggatagaatctctgaacttgactctggacagtcaatggaatccttggttcgttaatgcacaaattgcaggatacaaagtgaagtatacattgggaaaatatgagttgacatacgcaaccgtaaagggagccggtcacacagctccagagttcaatcctaaagaatgttttgctatgatcagtagatggttcgcagcctaccctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

291

Amino Acids

33.05

Weight (kDa)

5.64

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 752
AciI CCGC 1 cut(s) 350
AclWI GGATC 4 cut(s) 212, 225, 365, 378
AcsI RAATTY 2 cut(s) 356, 450
AfaI GTAC 4 cut(s) 147, 242, 495, 552
AfiI CCNNNNNNNGG 1 cut(s) 653
AflIII ACRYGT 2 cut(s) 148, 253
AgsI TTSAA 7 cut(s) 92, 125, 170, 251, 287, 476, 820
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 2 cut(s) 20, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AloI GAACNNNNNNTCC 2 cut(s) 331, 363
AluBI AGCT 2 cut(s) 534, 809
AluI AGCT 2 cut(s) 534, 809
AlwI GGATC 4 cut(s) 212, 225, 365, 378
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 2 cut(s) 356, 450
AsuHPI GGTGA 4 cut(s) 8, 529, 572, 638
BaeGI GKGCMC 1 cut(s) 659
BamHI GGATCC 2 cut(s) 217, 370
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 872
BccI CCATC 3 cut(s) 110, 400, 846
BciT130I CCWGG 2 cut(s) 22, 667
BciVI GTATCC 1 cut(s) 731
BclI TGATCA 3 cut(s) 13, 628, 843
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 2 cut(s) 604, 872
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
Bme1390I CCNGG 2 cut(s) 22, 667
BmiI GGNNCC 5 cut(s) 26, 219, 300, 372, 796
BmrFI CCNGG 2 cut(s) 22, 667
BmsI GCATC 2 cut(s) 355, 513
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 795
BsaJI CCNNGG 3 cut(s) 20, 416, 710
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse118I RCCGGY 1 cut(s) 797
BseBI CCWGG 2 cut(s) 22, 667
BseDI CCNNGG 3 cut(s) 20, 416, 710
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 653
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 1 cut(s) 872
BsiSI CCGG 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 659
Bsp1407I TGTACA 2 cut(s) 493, 550
Bsp143I GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
Bsp19I CCATGG 1 cut(s) 416
BspACI CCGC 1 cut(s) 350
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 5 cut(s) 26, 219, 300, 372, 796
BspPI GGATC 4 cut(s) 212, 225, 365, 378
BspQI GCTCTTC 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 797
BsrGI TGTACA 2 cut(s) 493, 550
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 3 cut(s) 20, 416, 710
BssMI GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
BssNAI GTATAC 1 cut(s) 753
BssT1I CCWWGG 2 cut(s) 416, 710
Bst1107I GTATAC 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 22, 667
Bst4CI ACNGT 4 cut(s) 472, 571, 698, 787
Bst6I CTCTTC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 2 cut(s) 493, 550
BstDSI CCRYGG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 7 cut(s) 16, 220, 247, 373, 382, 631, 846
BstMBI GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 2 cut(s) 22, 667
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 20, 665
BstSFI CTRYAG 2 cut(s) 604, 872
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 1 cut(s) 872
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 217, 370
BstYI RGATCY 2 cut(s) 217, 370
BstZ17I GTATAC 1 cut(s) 753
BsuI GTATCC 1 cut(s) 731
BtgI CCRYGG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 346
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 797
Csp6I GTAC 4 cut(s) 146, 241, 494, 551
CviAII CATG 4 cut(s) 149, 417, 632, 637
CviJI RGCY 6 cut(s) 428, 534, 603, 797, 809, 863
CviKI_1 RGCY 6 cut(s) 428, 534, 603, 797, 809, 863
CviQI GTAC 4 cut(s) 146, 241, 494, 551
DpnI GATC 7 cut(s) 15, 219, 246, 372, 381, 630, 845
DpnII GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 416, 710
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 2 cut(s) 20, 665
EcoT14I CCWWGG 2 cut(s) 416, 710
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 416, 710
FaeI CATG 4 cut(s) 152, 420, 635, 640
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 148, 416, 631, 636
FauNDI CATATG 2 cut(s) 547, 649
FbaI TGATCA 3 cut(s) 13, 628, 843
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 1 cut(s) 540
GluI GCNGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 795
HapII CCGG 1 cut(s) 798
Hin1II CATG 4 cut(s) 152, 420, 635, 640
HincII GTYRAC 2 cut(s) 259, 774
HindII GTYRAC 2 cut(s) 259, 774
HinfI GANTC 5 cut(s) 56, 136, 674, 688, 706
HpaII CCGG 1 cut(s) 798
HphI GGTGA 4 cut(s) 8, 529, 572, 638
Hpy166II GTNNAC 4 cut(s) 241, 259, 753, 774
Hpy188I TCNGA 4 cut(s) 81, 222, 615, 681
Hpy188III TCNNGA 5 cut(s) 92, 248, 632, 692, 812
Hpy8I GTNNAC 4 cut(s) 241, 259, 753, 774
HpyAV CCTTC 2 cut(s) 293, 398
HpyCH4III ACNGT 4 cut(s) 472, 571, 698, 787
HpyCH4IV ACGT 4 cut(s) 45, 253, 341, 489
HpyCH4V TGCA 5 cut(s) 195, 230, 267, 725, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpySE526I ACGT 4 cut(s) 45, 253, 341, 489
Hsp92II CATG 4 cut(s) 152, 420, 635, 640
Ksp22I TGATCA 3 cut(s) 13, 628, 843
Kzo9I GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 794, 814
LpnPI CCDG 9 cut(s) 7, 34, 482, 652, 677, 679, 720, 811, 825
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 2 cut(s) 355, 513
MaeI CTAG 1 cut(s) 540
MaeII ACGT 4 cut(s) 45, 253, 341, 489
MaeIII GTNAC 1 cut(s) 800
MalI GATC 7 cut(s) 15, 219, 246, 372, 381, 630, 845
MboI GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
MboII GAAGA 5 cut(s) 125, 146, 284, 476, 555
MflI RGATCY 2 cut(s) 217, 370
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 7 cut(s) 178, 190, 356, 401, 433, 450, 729
MlyI GAGTC 1 cut(s) 682
MnlI CCTC 5 cut(s) 38, 59, 185, 395, 599
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 3 cut(s) 6, 536, 720
MspI CCGG 1 cut(s) 798
MspR9I CCNGG 2 cut(s) 22, 667
MvaI CCWGG 2 cut(s) 22, 667
MwoI GCNNNNNNNGC 1 cut(s) 731
NcoI CCATGG 1 cut(s) 416
NdeI CATATG 2 cut(s) 547, 649
NdeII GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
NlaIII CATG 4 cut(s) 152, 420, 635, 640
NlaIV GGNNCC 5 cut(s) 26, 219, 300, 372, 796
NmuCI GTSAC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 152
PagI TCATGA 1 cut(s) 631
PciI ACATGT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 489
PfeI GAWTC 4 cut(s) 56, 136, 674, 706
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 20, 665
PspGI CCWGG 2 cut(s) 20, 665
PspN4I GGNNCC 5 cut(s) 26, 219, 300, 372, 796
PsuI RGATCY 2 cut(s) 217, 370
RsaI GTAC 4 cut(s) 147, 242, 495, 552
RsaNI GTAC 4 cut(s) 146, 241, 494, 551
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 3 cut(s) 6, 536, 720
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 7 cut(s) 13, 217, 244, 370, 379, 628, 843
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 22, 667
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 2 cut(s) 355, 513
SfcI CTRYAG 2 cut(s) 604, 872
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 7 cut(s) 178, 190, 356, 401, 433, 450, 729
SsiI CCGC 1 cut(s) 350
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 2 cut(s) 20, 665
StyI CCWWGG 2 cut(s) 416, 710
TaaI ACNGT 4 cut(s) 472, 571, 698, 787
TaiI ACGT 4 cut(s) 48, 256, 344, 492
TaqI TCGA 1 cut(s) 101
TasI AATT 7 cut(s) 178, 190, 356, 401, 433, 450, 729
TatI WGTACW 3 cut(s) 145, 493, 550
TfiI GAWTC 4 cut(s) 56, 136, 674, 706
Tru1I TTAA 3 cut(s) 6, 536, 720
Tru9I TTAA 3 cut(s) 6, 536, 720
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 3 cut(s) 126, 149, 534
XapI RAATTY 2 cut(s) 356, 450
XceI RCATGY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 752
XspI CTAG 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.