Rmu_co8348961.1_g000001

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8348961.1
OG0000102
Physical Location & Seq
Reverse (-)
1 .. 712
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8348961.1_g000001.1.cds

Sequence Viewer

Length: 333 bp
atgtgtttgagtgtgcttctcttattggcattctcaggcattgccacttctcagacaatcgttgagactctgcctgggtggaatgggacacttcccttcaaacttgaaacaggttacattgcggtggatgatttggatgaggtgcaactattctactattttgtcgagtcggagagaaacccaattgacgatcctcttatgctttggcttactggaggccctggatgttccgggttttctgcaatggcttatgaaattggtccatttagttttgatctgcattacaatggaagcatacccaatataattatgaatccatattcatggaccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

111

Amino Acids

12.34

Weight (kDa)

4.05

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 100, 107
AjnI CCWGG 2 cut(s) 73, 220
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 217
AspS9I GGNCC 3 cut(s) 218, 260, 327
AsuC2I CCSGG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 260, 327
BciT130I CCWGG 2 cut(s) 75, 222
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 59
Bme1390I CCNGG 3 cut(s) 75, 222, 232
Bme18I GGWCC 2 cut(s) 260, 327
BmgT120I GGNCC 3 cut(s) 218, 260, 327
BmrFI CCNGG 3 cut(s) 75, 222, 232
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 74, 220
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 3 cut(s) 39, 117, 249
BseBI CCWGG 2 cut(s) 75, 222
BseDI CCNNGG 2 cut(s) 74, 220
BseGI GGATG 3 cut(s) 133, 142, 230
BseMI GCAATG 3 cut(s) 39, 117, 249
BseMII CTCAG 2 cut(s) 48, 65
BseNI ACTGG 1 cut(s) 217
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 190, 274
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 47, 64
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 3 cut(s) 39, 117, 249
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 74, 220
BssMI GATC 2 cut(s) 190, 274
Bst2UI CCWGG 2 cut(s) 75, 222
BstDEI CTNAG 2 cut(s) 34, 51
BstF5I GGATG 3 cut(s) 133, 142, 230
BstKTI GATC 2 cut(s) 193, 277
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 190, 274
BstNI CCWGG 2 cut(s) 75, 222
BstSCI CCNGG 3 cut(s) 73, 220, 230
BstXI CCANNNNNNTGG 1 cut(s) 324
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 133, 142, 230
Cfr13I GGNCC 3 cut(s) 218, 260, 327
CviAII CATG 1 cut(s) 324
CviJI RGCY 3 cut(s) 208, 219, 248
CviKI_1 RGCY 3 cut(s) 208, 219, 248
DdeI CTNAG 2 cut(s) 34, 51
DpnI GATC 2 cut(s) 192, 276
DpnII GATC 2 cut(s) 190, 274
Eco47I GGWCC 2 cut(s) 260, 327
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 73, 220
FaeI CATG 1 cut(s) 327
FaiI YATR 7 cut(s) 200, 252, 296, 305, 311, 319, 325
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 323
FokI GGATG 3 cut(s) 140, 149, 237
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 327
HinfI GANTC 3 cut(s) 67, 167, 313
HpaII CCGG 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 54, 172
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 145, 242, 280
HpyF3I CTNAG 2 cut(s) 34, 51
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 2 cut(s) 190, 274
LpnPI CCDG 8 cut(s) 21, 60, 87, 96, 198, 207, 234, 244
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 192, 276
MboI GATC 2 cut(s) 190, 274
MfeI CAATTG 1 cut(s) 183
MluCI AATT 3 cut(s) 183, 255, 306
MlyI GAGTC 2 cut(s) 61, 176
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 133, 204, 209
MslI CAYNNNNRTG 3 cut(s) 122, 285, 322
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 75, 222, 232
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 75, 222
NciI CCSGG 1 cut(s) 232
NdeII GATC 2 cut(s) 190, 274
NlaIII CATG 1 cut(s) 327
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 313
PleI GAGTC 2 cut(s) 61, 175
PpsI GAGTC 2 cut(s) 61, 175
Psp6I CCWGG 2 cut(s) 73, 220
PspGI CCWGG 2 cut(s) 73, 220
PspPI GGNCC 3 cut(s) 218, 260, 327
RseI CAYNNNNRTG 3 cut(s) 122, 285, 322
Sau3AI GATC 2 cut(s) 190, 274
Sau96I GGNCC 3 cut(s) 218, 260, 327
SchI GAGTC 2 cut(s) 61, 176
ScrFI CCNGG 3 cut(s) 75, 222, 232
SetI ASST 2 cut(s) 115, 144
SinI GGWCC 2 cut(s) 260, 327
SmiMI CAYNNNNRTG 3 cut(s) 122, 285, 322
Sse9I AATT 3 cut(s) 183, 255, 306
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 73, 220, 230
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 183, 255, 306
TfiI GAWTC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 267, 312, 326
VpaK11BI GGWCC 2 cut(s) 260, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.