Rorug05G0535600

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000102
Physical Location & Seq
Reverse (-)
72386104 .. 72391744
5641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0535600.1

Sequence Viewer

Length: 2982 bp
ATGCCTTGCAGCCAAAATATATATAATACAGGGGTGAAAATGGAAAGTGGAGGTGAGGTAAAACGAAGAAAGAGTGCCCGAATTTCAGCATTAGAGGAGGAAAAGAGGAACAAAGCATGCACCGTAGACAGTGACAATGTTAGCGAGGATCAGACTCATGTTAGAAGAGGAACTTCTACAGGCAGGAGGGGCCGCAAGCGAAAAAGACTTGAAGATGTTGGCCTATCATCTCCACAGGATAGTGAAGACCCAAAAGATGAAGATTATTCGATCTACGAGGATGAAGCAGCATATCTGTCATATATACAGGAGGAGCCTGAAACTCGGATACTCGAGTTTATCCTTGATATACTGCAAAGGAGGGACACATGCAACTTATTCGCAAAGCCTGTTGACCCTCAAGAGGTTTGGACCTATTACAGGATTATTAAAGAGCCAATGGATTTTGGAACCATAAGGACAAAACTTCAGGAAGGAAAATATACAAGCTTACAACAGTTTGAGCATGATGTGCATCTAATATCCGCCAATGCAATGCACTTCAATTCATCGACCACCGTTTTTTACCAAGAGGCTCGAGCTATACAAGAGCTAGCGCAGCAGCTTTTCCAATCTCTAAGAGCTGATCCAGAACAGTTTCAGTTACAATTCTTACTGACAAAAAGAGGCCCTGGTAGGAAGCCGCAAAATCAAGGCAGAGGTTCACATAGAAGCGTTCCTAGATCAGTTGGCCGACCGAGTTCCTCGCGTGGTCCATATGTTAGAAGGAAAAGTCAAGCAGGCTCATCTAATGCAAACTCTTCCGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCATTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCTGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCGTCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGGTAACATTAATGGTCAAATACATCGTGGTTCCCCATATTACTTGCCCAACATTGATTCAAGTGCTTCATATTTTCACGGTGATGCTTCTGCACAAGGATATGCAAGAGCCACCAACGGTGGTATACATATAAATGATAGTGCTAACAGGAGAAACATGAACCCTCCTAGCACATCCCAGTTAGGCATGCTTCCGAACTATCGTGACAAGGGAAAAATGGTTGTTGATTTAAATCAAAACATGGAGCTCGTAGGGCCTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATGTAAACAGCAATGTTCGGTTGGAGTCACATATCCGTGTTGTTAGAGATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGAAGTTCAGGGCTGTGGACATGTTGGGCAAGCCTAACCCCCTAGAAAACCAGCAGCAGTTTCAGCAAGCTCATCAGTTGCCTAGTAGTACTGGGACTTCAAACAGTGGCATACTCTCTTGGGCCGTGAATAGGTTGGCCAATACTAGTCGCCAGGAAAACCAGCAGCTTCAGCCAGCTCAGTTGTCTAGTACTGGATCATCCAACCAGTCAAGTTTACTAGAGATCATGGCCGGAAGAAGTACCTATTTGAAGCCATCATCATCTTCGTTGCGCTCTTCATCTGCAATGTTATCAAGTTTGAGTGAGGCATCAACCTCCTGGAATGATTTTGGCTCACACCTGAACAACAACAATGCAGCTAAATCTGCACAGACAGGTCAGCAGCTTCAATGGAGCCAACGCAGTGCAGAACAAGATCTGCAAGAAAATTGTAGCTTTCTAGAAATGCTTGGTGACGGCTGTAACCCATGGGACAAGAGTAGTACACTTTTGAGAAACGAACAACATCTTGATGACGTTAATTATTCTTTGGGAAGTAATGCATTTATGAGAAATGAACAACAGCTTGGAGAGGTTAATTGTCAATCGGGGAACAGTACATCAATGAGAAATGAACAACTGTTTGGTGAGGGTGGTGCTCAATGGGGGAGCAATACATTTCTGAGGAAAGAACAACATCTTGCCGACAGTAACTTTCCTCTGGAAAACAATACATTTTTGAGGAAAGAACAACAGCTCAATGGGGGTAACTTTCTGTTGGGGAATGGTACATTTATGAGGAAAGAGCAACAGCTGGATGTGGAGAACTTTCACTTGGGGAATAGTACATGTTTGAGTAAAGAGAAACAGCCTGAGAATGGCAACTTCCAAGTGGGAAATAGCACATTTATGAGGAAAGACCAACTTGATGAAGCTAATTTCCAATTTGGGAATAGTACTTTCTTGAGGACAGAACAACAGTTTGATCAGGGTACTTTTCTACTGGGGAAGACTTCATTTATGAGCAAAGAACCACAGCTTGATCGTGGTAATGTTCAAATGGGGAATAGTACATTTATGAGCAAAGAACAACTGCTTAATGAGGGTGCTTTCAGACAGGGGAACAGTACCTTTATGAGCAGAGGACAACAACTTGGTGAAGGTTCTTTTCAATTGGGGAACAGTACATGTATGTGGACAGAGCAACAGATTGATGAGGTCAATCACCAATGGTGGAATAGTACATATTCGAGGACCAGTACATTTTCGAGGAAAGACCACCAATATCTGGGGAGGAGTGAACAACAGCAGCCTGTGGATGAGGGAGTAATGCCGGACTGGTACAGTGCAATATGTTCTGCCAATGAAAGAGCTACTAGTAGTAGTAGTACTCAATGGTACCAAAAGGAGCCTATTGATCAATCTTTGCTGCCCTTGCTCTTGGTGGACAATCAGCAGCCTAACTTGGCTCTTCAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

993

Amino Acids

111.28

Weight (kDa)

6.19

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 112 - 193 5.8e-21 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1129, 2898
AccB1I GGYRCC 2 cut(s) 1129, 2898
AccB7I CCANNNNNTGG 1 cut(s) 2788
AccI GTMKAC 2 cut(s) 126, 1273
AccII CGCG 1 cut(s) 748
AccIII TCCGGA 1 cut(s) 803
AciI CCGC 3 cut(s) 193, 525, 683
AclWI GGATC 3 cut(s) 156, 620, 1723
AcoI YGGCCR 3 cut(s) 730, 1656, 1749
AcsI RAATTY 2 cut(s) 81, 979
AcuI CTGAAG 3 cut(s) 452, 1673, 2957
AfiI CCNNNNNNNGG 5 cut(s) 403, 420, 1650, 2378, 2788
AflIII ACRYGT 3 cut(s) 1539, 2348, 2687
AgsI TTSAA 9 cut(s) 212, 544, 1209, 1509, 1620, 1771, 1910, 2558, 2672
AhlI ACTAGT 2 cut(s) 1664, 2876
AjnI CCWGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
AjuI GAANNNNNNNTTGG 6 cut(s) 2070, 2102, 2127, 2159, 2318, 2350
Alw21I GWGCWC 2 cut(s) 1398, 2161
AlwI GGATC 3 cut(s) 156, 620, 1723
Ama87I CYCGRG 2 cut(s) 332, 576
Aor13HI TCCGGA 1 cut(s) 803
ApaI GGGCCC 1 cut(s) 1429
ApoI RAATTY 2 cut(s) 81, 979
AseI ATTAAT 1 cut(s) 1158
Asp700I GAANNNNTTC 1 cut(s) 636
Asp718I GGTACC 2 cut(s) 1129, 2898
AspLEI GCGC 2 cut(s) 598, 1794
AsuNHI GCTAGC 2 cut(s) 592, 1003
AvaI CYCGRG 2 cut(s) 332, 576
AvaII GGWCC 3 cut(s) 411, 752, 2754
BaeGI GKGCMC 2 cut(s) 79, 1429
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
BalI TGGCCA 1 cut(s) 1658
BanI GGYRCC 2 cut(s) 1129, 2898
BanII GRGCYC 2 cut(s) 1398, 1429
BarI GAAGNNNNNNTAC 2 cut(s) 1600, 1632
BbsI GAAGAC 2 cut(s) 252, 2516
Bbv12I GWGCWC 2 cut(s) 1398, 2161
BccI CCATC 2 cut(s) 1142, 1783
BceAI ACGGC 2 cut(s) 1628, 1993
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
BciVI GTATCC 1 cut(s) 321
BclI TGATCA 2 cut(s) 2485, 2917
BcuI ACTAGT 2 cut(s) 1664, 2876
BfmI CTRYAG 1 cut(s) 177
BfuI GTATCC 1 cut(s) 321
BglII AGATCT 1 cut(s) 1936
BmcAI AGTACT 4 cut(s) 1609, 1711, 2458, 2890
Bme1390I CCNGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
Bme18I GGWCC 3 cut(s) 411, 752, 2754
BmeT110I CYCGRG 2 cut(s) 332, 576
BmrFI CCNGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
BmrI ACTGGG 3 cut(s) 1321, 1620, 2513
BmsI GCATC 4 cut(s) 523, 954, 1222, 1838
BmtI GCTAGC 2 cut(s) 596, 1007
BmuI ACTGGG 3 cut(s) 1321, 1620, 2513
BpiI GAAGAC 2 cut(s) 252, 2516
BpmI CTGGAG 1 cut(s) 1086
BpuEI CTTGAG 3 cut(s) 384, 1041, 2485
BsaBI GATNNNNATC 2 cut(s) 513, 1380
BsaJI CCNNGG 4 cut(s) 670, 1422, 1499, 1988
BsaWI WCCGGW 1 cut(s) 803
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 5 cut(s) 403, 420, 1650, 2378, 2788
Bse1I ACTGG 8 cut(s) 1103, 1327, 1615, 1717, 1726, 2508, 2757, 2843
Bse3DI GCAATG 3 cut(s) 540, 1456, 1812
Bse8I GATNNNNATC 2 cut(s) 513, 1380
BseAI TCCGGA 1 cut(s) 803
BseBI CCWGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
BseDI CCNNGG 4 cut(s) 670, 1422, 1499, 1988
BseGI GGATG 6 cut(s) 286, 877, 1322, 1718, 2323, 2824
BseJI GATNNNNATC 2 cut(s) 513, 1380
BseLI CCNNNNNNNGG 5 cut(s) 403, 420, 1650, 2378, 2788
BseMI GCAATG 3 cut(s) 540, 1456, 1812
BseMII CTCAG 3 cut(s) 1712, 2174, 2364
BseNI ACTGG 8 cut(s) 1103, 1327, 1615, 1717, 1726, 2508, 2757, 2843
BseRI GAGGAG 3 cut(s) 110, 326, 2809
BseSI GKGCMC 2 cut(s) 79, 1429
BsgI GTGCAG 3 cut(s) 1224, 1872, 1947
Bsh1236I CGCG 1 cut(s) 748
Bsh1285I CGRYCG 1 cut(s) 737
BshNI GGYRCC 2 cut(s) 1129, 2898
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 2 cut(s) 1398, 2161
BsiHKCI CYCGRG 2 cut(s) 332, 576
BsiSI CCGG 3 cut(s) 804, 1752, 2834
BslFI GGGAC 4 cut(s) 377, 1516, 1627, 2006
BslI CCNNNNNNNGG 5 cut(s) 403, 420, 1650, 2378, 2788
BsmFI GGGAC 4 cut(s) 377, 1516, 1627, 2006
BsoBI CYCGRG 2 cut(s) 332, 576
Bsp120I GGGCCC 1 cut(s) 1425
Bsp1286I GDGCHC 4 cut(s) 79, 1398, 1429, 2161
Bsp13I TCCGGA 1 cut(s) 803
Bsp19I CCATGG 1 cut(s) 1988
BspACI CCGC 3 cut(s) 193, 525, 683
BspCNI CTCAG 3 cut(s) 1711, 2175, 2365
BspEI TCCGGA 1 cut(s) 803
BspFNI CGCG 1 cut(s) 748
BspOI GCTAGC 2 cut(s) 596, 1007
BspPI GGATC 3 cut(s) 156, 620, 1723
BspQI GCTCTTC 2 cut(s) 1801, 2976
BspT107I GGYRCC 2 cut(s) 1129, 2898
BsrDI GCAATG 3 cut(s) 540, 1456, 1812
BsrI ACTGG 8 cut(s) 1103, 1327, 1615, 1717, 1726, 2508, 2757, 2843
BssECI CCNNGG 4 cut(s) 670, 1422, 1499, 1988
BssNAI GTATAC 1 cut(s) 1274
BssT1I CCWWGG 1 cut(s) 1988
Bst1107I GTATAC 1 cut(s) 1274
Bst2UI CCWGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
Bst6I CTCTTC 4 cut(s) 160, 805, 1801, 2976
BstAPI GCANNNNNTGC 1 cut(s) 511
BstDEI CTNAG 4 cut(s) 617, 1698, 2183, 2373
BstDSI CCRYGG 1 cut(s) 1988
BstEII GGTNACC 1 cut(s) 1136
BstENI CCTNNNNNAGG 1 cut(s) 418
BstF5I GGATG 6 cut(s) 286, 877, 1322, 1718, 2323, 2824
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 2 cut(s) 598, 1794
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 9 cut(s) 189, 511, 598, 1118, 1402, 1582, 1690, 1886, 2935
BstNI CCWGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
BstNSI RCATGY 6 cut(s) 120, 372, 1339, 1543, 2352, 2691
BstPI GGTNACC 1 cut(s) 1136
BstSCI CCNGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 79, 1429
BstUI CGCG 1 cut(s) 748
BstV2I GAAGAC 2 cut(s) 252, 2516
BstX2I RGATCY 1 cut(s) 1936
BstYI RGATCY 1 cut(s) 1936
BstZ17I GTATAC 1 cut(s) 1274
BsuI GTATCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 1988
BtsCI GGATG 6 cut(s) 286, 877, 1322, 1718, 2323, 2824
BtsI GCAGTG 2 cut(s) 1519, 1930
BtsIMutI CAGTG 5 cut(s) 136, 1519, 1630, 1930, 2851
CfoI GCGC 2 cut(s) 598, 1794
CsiI ACCWGGT 1 cut(s) 1132
DdeI CTNAG 4 cut(s) 617, 1698, 2183, 2373
DraI TTTAAA 1 cut(s) 1380
EaeI YGGCCR 3 cut(s) 730, 1656, 1749
Eam1104I CTCTTC 4 cut(s) 160, 805, 1801, 2976
EarI CTCTTC 4 cut(s) 160, 805, 1801, 2976
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 1396
Eco130I CCWWGG 1 cut(s) 1988
Eco24I GRGCYC 2 cut(s) 1398, 1429
Eco47I GGWCC 3 cut(s) 411, 752, 2754
Eco53kI GAGCTC 1 cut(s) 1396
Eco57I CTGAAG 3 cut(s) 452, 1673, 2957
Eco88I CYCGRG 2 cut(s) 332, 576
Eco91I GGTNACC 1 cut(s) 1136
EcoICRI GAGCTC 1 cut(s) 1396
EcoNI CCTNNNNNAGG 1 cut(s) 418
EcoO109I RGGNCCY 3 cut(s) 668, 1403, 1425
EcoO65I GGTNACC 1 cut(s) 1136
EcoRII CCWGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
EcoT14I CCWWGG 1 cut(s) 1988
EcoT22I ATGCAT 1 cut(s) 2065
EcoT38I GRGCYC 2 cut(s) 1398, 1429
ErhI CCWWGG 1 cut(s) 1988
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 2409, 2441
FaqI GGGAC 4 cut(s) 377, 1516, 1627, 2006
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 2 cut(s) 2485, 2917
FblI GTMKAC 2 cut(s) 126, 1273
FokI GGATG 6 cut(s) 293, 884, 1309, 1705, 2330, 2831
FriOI GRGCYC 2 cut(s) 1398, 1429
GlaI GCGC 2 cut(s) 597, 1793
GsuI CTGGAG 1 cut(s) 1086
HapII CCGG 3 cut(s) 804, 1752, 2834
HhaI GCGC 2 cut(s) 598, 1794
Hin6I GCGC 2 cut(s) 596, 1792
HinP1I GCGC 2 cut(s) 596, 1792
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 487, 1026
HinfI GANTC 6 cut(s) 154, 839, 905, 941, 1205, 1463
HpaII CCGG 3 cut(s) 804, 1752, 2834
Hpy188I TCNGA 8 cut(s) 153, 327, 844, 871, 1044, 1344, 2184, 2615
HpyAV CCTTC 4 cut(s) 467, 759, 1151, 2654
HpyCH4IV ACGT 1 cut(s) 2037
HpyF10VI GCNNNNNNNGC 9 cut(s) 189, 511, 598, 1118, 1402, 1582, 1690, 1886, 2935
HpyF3I CTNAG 4 cut(s) 617, 1698, 2183, 2373
HpySE526I ACGT 1 cut(s) 2037
HspAI GCGC 2 cut(s) 596, 1792
Kpn2I TCCGGA 1 cut(s) 803
KpnI GGTACC 2 cut(s) 1133, 2902
Ksp22I TGATCA 2 cut(s) 2485, 2917
LguI GCTCTTC 2 cut(s) 1801, 2976
LmnI GCTCC 7 cut(s) 313, 1099, 1105, 1393, 1914, 2169, 2908
LweI GCATC 4 cut(s) 523, 954, 1222, 1838
MabI ACCWGGT 1 cut(s) 1132
MaeII ACGT 1 cut(s) 2037
MfeI CAATTG 1 cut(s) 2672
MflI RGATCY 1 cut(s) 1936
MhlI GDGCHC 4 cut(s) 79, 1398, 1429, 2161
MlsI TGGCCA 1 cut(s) 1658
MluNI TGGCCA 1 cut(s) 1658
MlyI GAGTC 2 cut(s) 148, 1472
MmeI TCCRAC 2 cut(s) 1440, 1746
Mox20I TGGCCA 1 cut(s) 1658
Mph1103I ATGCAT 1 cut(s) 2065
MroI TCCGGA 1 cut(s) 803
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 1658
MseI TTAA 7 cut(s) 429, 833, 1158, 1379, 2040, 2097, 2598
MslI CAYNNNNRTG 6 cut(s) 1230, 1281, 1473, 2031, 2408, 2692
Msp20I TGGCCA 1 cut(s) 1658
MspA1I CMGCKG 2 cut(s) 2314, 2977
MspI CCGG 3 cut(s) 804, 1752, 2834
MspR9I CCNGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
MunI CAATTG 1 cut(s) 2672
MvaI CCWGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 9 cut(s) 189, 511, 598, 1118, 1402, 1582, 1690, 1886, 2935
NcoI CCATGG 1 cut(s) 1988
NdeI CATATG 1 cut(s) 757
NheI GCTAGC 2 cut(s) 592, 1003
NmuCI GTSAC 5 cut(s) 131, 1136, 1352, 1464, 1973
NsiI ATGCAT 1 cut(s) 2065
NspI RCATGY 6 cut(s) 120, 372, 1339, 1543, 2352, 2691
PaeI GCATGC 2 cut(s) 120, 1339
PaeR7I CTCGAG 2 cut(s) 332, 576
PciI ACATGT 3 cut(s) 1539, 2348, 2687
PciSI GCTCTTC 2 cut(s) 1801, 2976
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 839, 905, 941, 1205
PflMI CCANNNNNTGG 1 cut(s) 2788
PfoI TCCNGGA 1 cut(s) 1838
PleI GAGTC 2 cut(s) 148, 1471
PpsI GAGTC 2 cut(s) 148, 1471
PscI ACATGT 3 cut(s) 1539, 2348, 2687
PshBI ATTAAT 1 cut(s) 1158
Psp124BI GAGCTC 1 cut(s) 1398
Psp6I CCWGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
PspEI GGTNACC 1 cut(s) 1136
PspGI CCWGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
PspOMI GGGCCC 1 cut(s) 1425
PspXI VCTCGAGB 2 cut(s) 332, 576
PsuI RGATCY 1 cut(s) 1936
PvuII CAGCTG 2 cut(s) 2314, 2977
RseI CAYNNNNRTG 6 cut(s) 1230, 1281, 1473, 2031, 2408, 2692
SacI GAGCTC 1 cut(s) 1398
SapI GCTCTTC 2 cut(s) 1801, 2976
SaqAI TTAA 7 cut(s) 429, 833, 1158, 1379, 2040, 2097, 2598
ScaI AGTACT 4 cut(s) 1609, 1711, 2458, 2890
SchI GAGTC 2 cut(s) 148, 1472
ScrFI CCNGG 7 cut(s) 672, 1134, 1407, 1423, 1500, 1673, 1840
SduI GDGCHC 4 cut(s) 79, 1398, 1429, 2161
SexAI ACCWGGT 1 cut(s) 1132
SfaNI GCATC 4 cut(s) 523, 954, 1222, 1838
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 2 cut(s) 332, 576
SinI GGWCC 3 cut(s) 411, 752, 2754
SlaI CTCGAG 2 cut(s) 332, 576
SmiI ATTTAAAT 1 cut(s) 1380
SmiMI CAYNNNNRTG 6 cut(s) 1230, 1281, 1473, 2031, 2408, 2692
SmlI CTYRAG 5 cut(s) 332, 399, 576, 1056, 2464
SmoI CTYRAG 5 cut(s) 332, 399, 576, 1056, 2464
SpeI ACTAGT 2 cut(s) 1664, 2876
SphI GCATGC 2 cut(s) 120, 1339
SsiI CCGC 3 cut(s) 193, 525, 683
SstI GAGCTC 1 cut(s) 1398
StyD4I CCNGG 7 cut(s) 670, 1132, 1405, 1421, 1498, 1671, 1838
StyI CCWWGG 1 cut(s) 1988
SwaI ATTTAAAT 1 cut(s) 1380
TaiI ACGT 1 cut(s) 2040
TaqI TCGA 8 cut(s) 269, 333, 551, 577, 827, 1146, 2750, 2768
TaqII GACCGA 1 cut(s) 751
TauI GCSGC 2 cut(s) 195, 685
TfiI GAWTC 4 cut(s) 839, 905, 941, 1205
Tru1I TTAA 7 cut(s) 429, 833, 1158, 1379, 2040, 2097, 2598
Tru9I TTAA 7 cut(s) 429, 833, 1158, 1379, 2040, 2097, 2598
TscAI CASTG 5 cut(s) 136, 1519, 1630, 1930, 2851
TseFI GTSAC 5 cut(s) 131, 1136, 1352, 1464, 1973
Tsp45I GTSAC 5 cut(s) 131, 1136, 1352, 1464, 1973
TspGWI ACGGA 1 cut(s) 1463
TspRI CASTG 5 cut(s) 136, 1519, 1630, 1930, 2851
Van91I CCANNNNNTGG 1 cut(s) 2788
VpaK11BI GGWCC 3 cut(s) 411, 752, 2754
VspI ATTAAT 1 cut(s) 1158
XagI CCTNNNNNAGG 1 cut(s) 418
XapI RAATTY 2 cut(s) 81, 979
XbaI TCTAGA 1 cut(s) 1960
XceI RCATGY 6 cut(s) 120, 372, 1339, 1543, 2352, 2691
XhoI CTCGAG 2 cut(s) 332, 576
XmiI GTMKAC 2 cut(s) 126, 1273
XmnI GAANNNNTTC 1 cut(s) 636
ZrmI AGTACT 4 cut(s) 1609, 1711, 2458, 2890
Zsp2I ATGCAT 1 cut(s) 2065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.