AT2G22960

serine-type carboxypeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000102
Physical Location & Seq
Forward (+)
9770894 .. 9772977
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22960.1

Sequence Viewer

Length: 555 bp
ATGAGAACTTTTTCACCCAAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCTGAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACATCGGTATTGCTAAATATTGGGCCAATGACGAGAGGGTACGTGAAGCTCTTCAAATAAGAAAGGGAAGTATAGGAAAATGGATACGATGTAATTCGAATATACATTACGATGACGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAACGGATACCGATCTCTTATTTACAGTGGTGATCACGATATGGAGGTACCTTTCCTTGCAACTGAAGCTTGGATAAGATCTCTTAATTATCCTATTATTGATGATTGGAGGCCTTGGATAATAAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTATCAAGGGAGGTGGACACACTGCAGAGTATAAACCAGCGGAGAGCTTTATCATGTTCCAACGATGGATCAGTGGCCAGCCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005911 GO:0006508 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008374 GO:0009056 GO:0009057 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009505 GO:0009506 GO:0009628 GO:0009698 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009812 GO:0009813 GO:0009987 GO:0010033 GO:0010224 GO:0014070 GO:0016740 GO:0016746 GO:0016747 GO:0016752 GO:0016753 GO:0016754 GO:0016787 GO:0017171 GO:0019538 GO:0019748 GO:0023052 GO:0030054 GO:0030163 GO:0030312 GO:0032870 GO:0033993 GO:0034644 GO:0042221 GO:0042440 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051603 GO:0051716 GO:0055044 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071214 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071493 GO:0071495 GO:0071704 GO:0071944 GO:0104004 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

184

Amino Acids

21.2

Weight (kDa)

7.02

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 48 - 181 3.4e-40 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 334
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 3 cut(s) 131, 171, 336
AgsI TTSAA 3 cut(s) 98, 122, 185
AluBI AGCT 3 cut(s) 179, 356, 513
AluI AGCT 3 cut(s) 179, 356, 513
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 4 cut(s) 100, 153, 398, 541
ApeKI GCWGC 2 cut(s) 25, 258
Asp700I GAANNNNTTC 2 cut(s) 10, 180
Asp718I GGTACC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 101, 153
AsuC2I CCSGG 2 cut(s) 90, 127
AsuHPI GGTGA 2 cut(s) 6, 329
AsuII TTCGAA 2 cut(s) 114, 227
BaeI ACNNNNGTAYC 2 cut(s) 121, 154
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 12, 270
BccI CCATC 1 cut(s) 525
BciVI GTATCC 3 cut(s) 207, 287, 422
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 2 cut(s) 90, 127
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 3 cut(s) 207, 287, 422
BglII AGATCT 1 cut(s) 365
BisI GCNGC 2 cut(s) 26, 259
BlsI GCNGC 2 cut(s) 27, 260
Bme1390I CCNGG 2 cut(s) 90, 127
BmgT120I GGNCC 2 cut(s) 101, 153
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 90, 127
BmsI GCATC 1 cut(s) 294
Bpu14I TTCGAA 2 cut(s) 114, 227
BpuMI CCSGG 2 cut(s) 90, 127
BsaAI YACGTR 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 12, 270
BshFI GGCC 4 cut(s) 102, 155, 400, 543
BshNI GGYRCC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 90, 126
BsnI GGCC 4 cut(s) 102, 155, 400, 543
Bsp119I TTCGAA 2 cut(s) 114, 227
Bsp143I GATC 4 cut(s) 299, 319, 365, 534
BspACI CCGC 1 cut(s) 506
BspANI GGCC 4 cut(s) 102, 155, 400, 543
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 2 cut(s) 114, 227
BspT107I GGYRCC 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 4 cut(s) 299, 319, 365, 534
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 111, 186
BstBAI YACGTR 1 cut(s) 173
BstBI TTCGAA 2 cut(s) 114, 227
BstC8I GCNNGC 1 cut(s) 545
BstKTI GATC 4 cut(s) 302, 322, 368, 537
BstMBI GATC 4 cut(s) 299, 319, 365, 534
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 88, 125
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 12, 270
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuI GTATCC 3 cut(s) 207, 287, 422
BsuRI GGCC 4 cut(s) 102, 155, 400, 543
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 3 cut(s) 319, 486, 544
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 1 cut(s) 550
Cfr13I GGNCC 2 cut(s) 101, 153
Csp6I GTAC 3 cut(s) 130, 170, 335
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 2 cut(s) 56, 520
CviJI RGCY 9 cut(s) 69, 102, 155, 179, 356, 400, 513, 543, 547
CviKI_1 RGCY 9 cut(s) 69, 102, 155, 179, 356, 400, 513, 543, 547
CviQI GTAC 3 cut(s) 130, 170, 335
DpnI GATC 4 cut(s) 301, 321, 367, 536
DpnII GATC 4 cut(s) 299, 319, 365, 534
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 2 cut(s) 111, 186
EarI CTCTTC 2 cut(s) 111, 186
Eco130I CCWWGG 1 cut(s) 401
Eco147I AGGCCT 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 2 cut(s) 59, 523
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FatI CATG 2 cut(s) 55, 519
FauNDI CATATG 2 cut(s) 273, 460
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 26, 259
Fsp4HI GCNGC 2 cut(s) 26, 259
GluI GCNGC 2 cut(s) 26, 259
HaeIII GGCC 4 cut(s) 102, 155, 400, 543
HapII CCGG 2 cut(s) 90, 126
Hin1II CATG 2 cut(s) 59, 523
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 62
HpaII CCGG 2 cut(s) 90, 126
HphI GGTGA 2 cut(s) 6, 329
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 347, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 2 cut(s) 59, 523
KpnI GGTACC 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 299, 319, 365, 534
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 51, 103, 139, 411, 516
Lsp1109I GCAGC 2 cut(s) 12, 270
LweI GCATC 1 cut(s) 294
MaeII ACGT 1 cut(s) 172
MalI GATC 4 cut(s) 301, 321, 367, 536
MboI GATC 4 cut(s) 299, 319, 365, 534
MboII GAAGA 4 cut(s) 23, 77, 98, 173
MflI RGATCY 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 2 cut(s) 223, 373
MluNI TGGCCA 1 cut(s) 543
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 114, 159, 325, 390, 470
Mox20I TGGCCA 1 cut(s) 543
MroXI GAANNNNTTC 2 cut(s) 10, 180
MscI TGGCCA 1 cut(s) 543
MseI TTAA 2 cut(s) 47, 372
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 2 cut(s) 90, 126
MspR9I CCNGG 2 cut(s) 90, 127
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 2 cut(s) 90, 127
NdeI CATATG 2 cut(s) 273, 460
NdeII GATC 4 cut(s) 299, 319, 365, 534
NlaIII CATG 2 cut(s) 59, 523
NlaIV GGNNCC 1 cut(s) 336
NspV TTCGAA 2 cut(s) 114, 227
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 10, 180
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 27, 260
Ppu21I YACGTR 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 101, 153
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 3 cut(s) 131, 171, 336
RsaNI GTAC 3 cut(s) 130, 170, 335
RseI CAYNNNNRTG 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 47, 372
SatI GCNGC 2 cut(s) 26, 259
Sau3AI GATC 4 cut(s) 299, 319, 365, 534
Sau96I GGNCC 2 cut(s) 101, 153
ScrFI CCNGG 2 cut(s) 90, 127
SetI ASST 8 cut(s) 175, 181, 336, 340, 358, 443, 481, 515
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 2 cut(s) 114, 227
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 2 cut(s) 223, 373
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 149
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 88, 125
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 114, 227
TasI AATT 2 cut(s) 223, 373
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 47, 372
Tru9I TTAA 2 cut(s) 47, 372
TscAI CASTG 3 cut(s) 319, 493, 544
TseI GCWGC 2 cut(s) 25, 258
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 319, 493, 544
XmnI GAANNNNTTC 2 cut(s) 10, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.