MD15G1299200.v1.1

Serine carboxypeptidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
28184891 .. 28185783
893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1299200.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGAAGCACTACTTTTTGAGAGCATGCTGGGAAAGTTTATTTTTGCCAAATATTTCAGGTGGCTTTGTTTGCATACGATATTTGTGCTGCTTCTTTTCTCAAAGCCACAGCTGGTTTCTTGCAGTGCCATTATCAAAACCCTACCAGGATTCCATGGTTCTCTTTCCTTCAAACTAGAAACTGGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

9.18

Isoelectric Point (pI)

26.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 147
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 26
CviAII CATG 2 cut(s) 25, 155
CviJI RGCY 3 cut(s) 64, 106, 112
CviKI_1 RGCY 3 cut(s) 64, 106, 112
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 28, 158
FaiI YATR 3 cut(s) 26, 75, 156
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 2 cut(s) 24, 154
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 28, 158
HinfI GANTC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 73, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
Hsp92II CATG 2 cut(s) 28, 158
LpnPI CCDG 6 cut(s) 14, 43, 98, 132, 159, 168
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 70
NcoI CCATGG 1 cut(s) 154
NlaIII CATG 2 cut(s) 28, 158
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 112
SatI GCNGC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 147
SetI ASST 2 cut(s) 62, 114
SgeI CNNG 8 cut(s) 37, 41, 70, 125, 132, 158, 159, 167
SphI GCATGC 1 cut(s) 28
SspI AATATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 154
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 88
TspRI CASTG 1 cut(s) 130
XceI RCATGY 1 cut(s) 28
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.