Rmu_sc0003829.1_g000040

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003829.1
OG0000102
Physical Location & Seq
Forward (+)
128096 .. 129137
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003829.1_g000040.1.cds

Sequence Viewer

Length: 534 bp
atgtgtgctgaacactctattgcaggtccactatcatttgaccctgcaaattccattggcaacaagccacagttgaagttgaacccatactcatggacaaaggtcgccaacattatattcatagatgcacctgtgggcactggttactcatatgcaaaaacttgggaaggatacagcaatatgagtgacacattatcagctgcagagacttatgaatttctcagaaagtggtttatggatcaccccaagttcctcaaaaatgcactctatgttgccggagattcttattcgggcattgttcttcctattattgttcaggaaatatctgatggtaatgaagatggacgtcacccaccaatgaatatccaaggatatgtgcttggtaatccaggaacagacatagatgtcgatgagaattacagagtgccatttgctttcagaaaagcgcttatatcagatgaactatacgaggtgcaacacgctaacacccttaaaattttgtttgtttcttctaagttgcatttagagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

177

Amino Acids

19.81

Weight (kDa)

5.12

Isoelectric Point (pI)

22.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AatII GACGTC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 3 cut(s) 49, 215, 495
AcyI GRCGYC 1 cut(s) 346
AfeI AGCGCT 1 cut(s) 447
AgsI TTSAA 2 cut(s) 76, 82
AjnI CCWGG 1 cut(s) 388
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 3 cut(s) 49, 215, 495
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 233, 341
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 323, 335
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 1 cut(s) 164
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 115
BoxI GACNNNNGTC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 221, 513
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 26
CviAII CATG 1 cut(s) 93
CviJI RGCY 2 cut(s) 67, 200
CviKI_1 RGCY 2 cut(s) 67, 200
DdeI CTNAG 2 cut(s) 221, 513
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 26
Eco47III AGCGCT 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 1 cut(s) 96
FatI CATG 1 cut(s) 92
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 449
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 233, 341
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 224, 328, 440, 457
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 8 cut(s) 23, 47, 128, 155, 203, 263, 475, 520
HpyF3I CTNAG 2 cut(s) 221, 513
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 8 cut(s) 9, 57, 126, 144, 289, 302, 375, 402
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 143, 185, 347
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 293, 350, 501
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 4 cut(s) 49, 215, 415, 495
MnlI CCTC 2 cut(s) 263, 463
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 185, 347
PfeI GAWTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 140
SetI ASST 6 cut(s) 28, 105, 133, 202, 349, 474
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 91
Sse9I AATT 4 cut(s) 49, 215, 415, 495
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 408
TasI AATT 4 cut(s) 49, 215, 415, 495
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 185, 347
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 2 cut(s) 185, 347
TspDTI ATGAA 5 cut(s) 109, 228, 351, 374, 474
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 49, 215, 495
ZraI GACGTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.