RchiOBHm_Chr5g0043261

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000102
Physical Location & Seq
Forward (+)
38177102 .. 38178439
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32157

Sequence Viewer

Length: 288 bp
ATGAAACAGTGGTTATATGCACACCCAAGGTTTCAGGGAAATCAACTGTACATTGGTGGTGACTCATATTCAGGACTTATTGTTCCCATTCTTCTTAAGAATATACTGTCGAGCAAATCCAAACCAAGCTTCGACTCGCCAATCTTCGCCGCCAGGAACACTATGAAAAGTTGTCAAACAAGGCCCGGACAAAGCCCAGAAGCCCCTCTCGATCTTCTTCTCAAGAGGAAGACCTTGGCGAGCGACTGGATGCCAAGCTCCAGGCTGCTAAGAAGAAAAGGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

95

Amino Acids

10.72

Weight (kDa)

10.4

Isoelectric Point (pI)

77.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 1 - 42 6.6e-09 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AfaI GTAC 1 cut(s) 50
AflII CTTAAG 1 cut(s) 95
AjnI CCWGG 2 cut(s) 152, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 2 cut(s) 129, 258
AluI AGCT 2 cut(s) 129, 258
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 154, 262
BcnI CCSGG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 150, 266
BlsI GCNGC 2 cut(s) 151, 267
Bme1390I CCNGG 3 cut(s) 154, 186, 262
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 3 cut(s) 154, 186, 262
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 26, 234
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 2 cut(s) 154, 262
BseDI CCNNGG 2 cut(s) 26, 234
BseGI GGATG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 186
BsnI GGCC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 26, 234
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 26, 234
Bst2UI CCWGG 2 cut(s) 154, 262
Bst4CI ACNGT 3 cut(s) 9, 48, 108
BstAFI CTTAAG 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstNI CCWGG 2 cut(s) 154, 262
BstSCI CCNGG 3 cut(s) 152, 184, 260
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 49
CviJI RGCY 6 cut(s) 129, 184, 195, 203, 258, 265
CviKI_1 RGCY 6 cut(s) 129, 184, 195, 203, 258, 265
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 269
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 26, 234
EcoRII CCWGG 2 cut(s) 152, 260
EcoT14I CCWWGG 2 cut(s) 26, 234
ErhI CCWWGG 2 cut(s) 26, 234
FaiI YATR 6 cut(s) 16, 18, 67, 104, 164, 286
Fnu4HI GCNGC 2 cut(s) 150, 266
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 150, 266
GluI GCNGC 2 cut(s) 150, 266
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 2 cut(s) 62, 134
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 71
Hpy188III TCNNGA 3 cut(s) 72, 209, 223
HpyCH4III ACNGT 3 cut(s) 9, 48, 108
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 269
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 9 cut(s) 20, 57, 139, 166, 199, 210, 232, 247, 274
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 83, 136, 206, 209, 241, 285
MlyI GAGTC 2 cut(s) 56, 128
MnlI CCTC 2 cut(s) 216, 219
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 154, 186, 262
MvaI CCWGG 2 cut(s) 154, 262
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 151, 267
PleI GAGTC 2 cut(s) 56, 128
PpsI GAGTC 2 cut(s) 56, 128
Psp6I CCWGG 2 cut(s) 152, 260
PspGI CCWGG 2 cut(s) 152, 260
PspPI GGNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 150, 266
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 56, 128
ScrFI CCNGG 3 cut(s) 154, 186, 262
SetI ASST 5 cut(s) 32, 131, 236, 260, 283
SfaNI GCATC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 95, 221
SmoI CTYRAG 2 cut(s) 95, 221
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 152, 184, 260
StyI CCWWGG 2 cut(s) 26, 234
TaaI ACNGT 3 cut(s) 9, 48, 108
TaqI TCGA 3 cut(s) 110, 132, 210
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 17, 179
TspRI CASTG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.