Rw6G004520

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
7232955 .. 7258118
25164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004520.1

Sequence Viewer

Length: 846 bp
ATGGCCAAATGTTATTGTTTCTTACAAACAAGTATAGCTGTAGCCATCAGGTGCATCATGACTGTGACTCTACAAGCAGTTCTTCTAGTCTTCCTCTTTCACATCAATGCTGCTTCCAGGTCCATCATCTCCAGCTTACCCGGCTTTCCCGGTGACCTTCCATTTAGACTTGAAACTGGGTACATCGGAGTTGGAGACTCGGATAATGTGCAACTATTTTATTACTTCATTGAGTCCGAAGGATCTCCAGCATATGATCCTCTTGTGCTTTGGCTCACCGGAGGTCCTGGTTGTTCTGGTTTTTCTGGCCTTGTTTATGATGGAAATTATTCTATGCACCGACGGTATTTTGTTATAGGTCCTCTGTCATTTGACTATGCACACTCGTTTGACAACAAGCCACAGCTGAGGTTGAACCCATACTCATGGACAAAGGTTGCCAACATAATATTTATAGATGCCCCAGTGGGGACAGGATTCTCATATACAAAAGCTTGGGACGAATATCGCATTGTGAATGACACAATATCAGCCGCACAAACATATCAGTTTCTTAGAAAGTGGCTTGTGGATCACCCCAGGTTCATCTCCAATCCACTCTACATTGCTAGAGATTCTTATGCAGGCATAGTTCTTCCGATCATCATTCAAGAAATATCTGATGGTAATGAAGATGGACTTGAGCCAGCAATGAATCTCCAAGGGAAGTGTTCAGGAAGTGGGGTTTATTATTATAATATGAGTGGGAGGTATGTGGGTGATTGGGTGGATGAGAAGCATGTGGTCATGGTGCGGACACATGGGCAAGAGAGAGCAGGTATCACGGGCAGTATAGAAAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

281

Amino Acids

31.42

Weight (kDa)

5.66

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 47 - 259 2.5e-59 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
Acc36I ACCTGC 1 cut(s) 806
AciI CCGC 2 cut(s) 534, 793
AclWI GGATC 3 cut(s) 250, 251, 579
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 468
AgsI TTSAA 3 cut(s) 173, 415, 650
AjnI CCWGG 3 cut(s) 116, 286, 578
AluBI AGCT 4 cut(s) 38, 135, 406, 494
AluI AGCT 4 cut(s) 38, 135, 406, 494
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 3 cut(s) 250, 251, 579
AoxI GGCC 2 cut(s) 3, 307
ApeKI GCWGC 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 120, 284, 359
AsuC2I CCSGG 2 cut(s) 141, 150
AsuHPI GGTGA 4 cut(s) 164, 268, 566, 770
AvaII GGWCC 3 cut(s) 120, 284, 359
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 82
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 97
BccI CCATC 5 cut(s) 53, 131, 314, 656, 668
BciT130I CCWGG 3 cut(s) 118, 288, 580
BcnI CCSGG 2 cut(s) 141, 150
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 86, 609
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 806
BisI GCNGC 2 cut(s) 111, 534
BlsI GCNGC 2 cut(s) 112, 535
Bme1390I CCNGG 5 cut(s) 118, 141, 150, 288, 580
Bme18I GGWCC 3 cut(s) 120, 284, 359
BmgT120I GGNCC 3 cut(s) 120, 284, 359
BmrFI CCNGG 5 cut(s) 118, 141, 150, 288, 580
BmrI ACTGGG 2 cut(s) 186, 458
BmsI GCATC 2 cut(s) 63, 448
BmuI ACTGGG 2 cut(s) 186, 458
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 2 cut(s) 115, 231
Bpu10I CCTNAGC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 2 cut(s) 141, 150
BsaJI CCNNGG 2 cut(s) 578, 700
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 2 cut(s) 181, 464
Bse3DI GCAATG 2 cut(s) 603, 696
BseBI CCWGG 3 cut(s) 118, 288, 580
BseDI CCNNGG 2 cut(s) 578, 700
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMI GCAATG 2 cut(s) 603, 696
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 2 cut(s) 181, 464
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 5, 309
BsiSI CCGG 3 cut(s) 141, 150, 279
BslFI GGGAC 2 cut(s) 484, 512
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 484, 512
BsnI GGCC 2 cut(s) 5, 309
Bsp143I GATC 4 cut(s) 242, 256, 571, 639
BspACI CCGC 2 cut(s) 534, 793
BspANI GGCC 2 cut(s) 5, 309
BspCNI CTCAG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 3 cut(s) 250, 251, 579
BsrDI GCAATG 2 cut(s) 603, 696
BsrI ACTGG 2 cut(s) 181, 464
BssECI CCNNGG 2 cut(s) 578, 700
BssMI GATC 4 cut(s) 242, 256, 571, 639
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 3 cut(s) 118, 288, 580
Bst4CI ACNGT 2 cut(s) 64, 345
BstC8I GCNNGC 2 cut(s) 625, 687
BstDEI CTNAG 2 cut(s) 407, 554
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 775
BstKTI GATC 4 cut(s) 245, 259, 574, 642
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 242, 256, 571, 639
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 3 cut(s) 118, 288, 580
BstNSI RCATGY 1 cut(s) 782
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 5 cut(s) 116, 139, 148, 286, 578
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 426
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 5, 309
BtsCI GGATG 1 cut(s) 775
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 625, 687
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 3 cut(s) 120, 284, 359
Csp6I GTAC 1 cut(s) 181
CviAII CATG 5 cut(s) 58, 426, 779, 787, 800
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 407, 554
DpnI GATC 4 cut(s) 244, 258, 573, 641
DpnII GATC 4 cut(s) 242, 256, 571, 639
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 700
Eco47I GGWCC 3 cut(s) 120, 284, 359
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 2 cut(s) 284, 359
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 3 cut(s) 116, 286, 578
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 5 cut(s) 61, 429, 782, 790, 803
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 663, 695
FaqI GGGAC 2 cut(s) 484, 512
FatI CATG 5 cut(s) 57, 425, 778, 786, 799
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 111, 534
FokI GGATG 1 cut(s) 782
Fsp4HI GCNGC 2 cut(s) 111, 534
FspBI CTAG 2 cut(s) 86, 609
GluI GCNGC 2 cut(s) 111, 534
GsuI CTGGAG 2 cut(s) 115, 231
HaeIII GGCC 2 cut(s) 5, 309
HapII CCGG 3 cut(s) 141, 150, 279
Hin1II CATG 5 cut(s) 61, 429, 782, 790, 803
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 6 cut(s) 67, 197, 233, 477, 614, 694
HpaII CCGG 3 cut(s) 141, 150, 279
HphI GGTGA 4 cut(s) 164, 268, 566, 770
Hpy188I TCNGA 5 cut(s) 188, 202, 238, 639, 661
Hpy188III TCNNGA 3 cut(s) 58, 650, 714
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 167, 233
HpyCH4III ACNGT 2 cut(s) 64, 345
HpyCH4V TGCA 5 cut(s) 54, 211, 337, 380, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 407, 554
Hsp92II CATG 5 cut(s) 61, 429, 782, 790, 803
Kzo9I GATC 4 cut(s) 242, 256, 571, 639
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 63, 448
MaeI CTAG 2 cut(s) 86, 609
MaeIII GTNAC 2 cut(s) 64, 152
MalI GATC 4 cut(s) 244, 258, 573, 641
MboI GATC 4 cut(s) 242, 256, 571, 639
MboII GAAGA 4 cut(s) 74, 82, 626, 683
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 61, 191, 242
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 6 cut(s) 104, 270, 275, 372, 402, 741
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 62, 105, 424
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 3 cut(s) 141, 150, 279
MspR9I CCNGG 5 cut(s) 118, 141, 150, 288, 580
MvaI CCWGG 3 cut(s) 118, 288, 580
MwoI GCNNNNNNNGC 1 cut(s) 141
NciI CCSGG 2 cut(s) 141, 150
NdeI CATATG 1 cut(s) 253
NdeII GATC 4 cut(s) 242, 256, 571, 639
NlaIII CATG 5 cut(s) 61, 429, 782, 790, 803
NmuCI GTSAC 2 cut(s) 64, 152
NspI RCATGY 1 cut(s) 782
PagI TCATGA 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 3 cut(s) 477, 614, 694
PkrI GCNGC 2 cut(s) 112, 535
PleI GAGTC 3 cut(s) 61, 191, 241
PpsI GAGTC 3 cut(s) 61, 191, 241
PpuMI RGGWCCY 2 cut(s) 284, 359
PsiI TTATAA 1 cut(s) 735
Psp5II RGGWCCY 2 cut(s) 284, 359
Psp6I CCWGG 3 cut(s) 116, 286, 578
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 3 cut(s) 116, 286, 578
PspPI GGNCC 3 cut(s) 120, 284, 359
PspPPI RGGWCCY 2 cut(s) 284, 359
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 3 cut(s) 62, 105, 424
SatI GCNGC 2 cut(s) 111, 534
Sau3AI GATC 4 cut(s) 242, 256, 571, 639
Sau96I GGNCC 3 cut(s) 120, 284, 359
SchI GAGTC 3 cut(s) 61, 191, 242
ScrFI CCNGG 5 cut(s) 118, 141, 150, 288, 580
SfaNI GCATC 2 cut(s) 63, 448
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 3 cut(s) 120, 284, 359
SmiMI CAYNNNNRTG 3 cut(s) 62, 105, 424
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 1 cut(s) 325
SsiI CCGC 2 cut(s) 534, 793
SspI AATATT 1 cut(s) 450
SspMI CTAG 2 cut(s) 86, 609
StyD4I CCNGG 5 cut(s) 116, 139, 148, 286, 578
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 64, 345
TasI AATT 1 cut(s) 325
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 477, 614, 694
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 2 cut(s) 64, 152
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 64, 152
TspDTI ATGAA 4 cut(s) 217, 574, 684, 707
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 3 cut(s) 120, 284, 359
XceI RCATGY 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 2 cut(s) 86, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.