Rw2G053970

Serine carboxypeptidase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
81710580 .. 81716996
6417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053970.1

Sequence Viewer

Length: 591 bp
ATGAATTTTAAGGTGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCAAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTAAACCAGTAAAAGTGGTAGCACCTATAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCCGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTGGCCAACATAATCTATACTTCCGATACAAAATCAGCTGCACAGACCTATACTTTCTTAAGAAAGGGAAGGAGAGAAGAATCACAAGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTACAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGATCTACATCAACTCAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

5.0

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 107 - 188 1.5e-10 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 2 cut(s) 54, 237
AcsI RAATTY 3 cut(s) 4, 30, 537
AdeI CACNNNGTG 2 cut(s) 394, 482
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 146, 169, 497
AjiI CACGTC 1 cut(s) 92
AluBI AGCT 2 cut(s) 224, 272
AluI AGCT 2 cut(s) 224, 272
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 54, 237
ApeKI GCWGC 3 cut(s) 191, 272, 425
ApoI RAATTY 3 cut(s) 4, 30, 537
AsuHPI GGTGA 2 cut(s) 28, 380
BalI TGGCCA 2 cut(s) 56, 239
BbsI GAAGAC 1 cut(s) 506
BbvI GCAGC 3 cut(s) 203, 259, 412
BciVI GTATCC 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 138, 189
BfrI CTTAAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 3 cut(s) 192, 273, 426
BlsI GCNGC 3 cut(s) 193, 274, 427
BmgBI CACGTC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 546
BmsI GCATC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 506
BplI GAGNNNNNCTC 2 cut(s) 384, 416
BpuEI CTTGAG 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 42, 213
Bse1I ACTGG 3 cut(s) 119, 233, 341
Bse8I GATNNNNATC 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 42, 213
BseJI GATNNNNATC 1 cut(s) 573
BseNI ACTGG 3 cut(s) 119, 233, 341
BseXI GCAGC 3 cut(s) 203, 259, 412
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 56, 239
BslFI GGGAC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 56, 239
Bsp143I GATC 2 cut(s) 172, 568
Bsp19I CCATGG 1 cut(s) 213
BspANI GGCC 2 cut(s) 56, 239
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 498
BspTI CTTAAG 1 cut(s) 292
BsrI ACTGG 3 cut(s) 119, 233, 341
BssECI CCNNGG 2 cut(s) 42, 213
BssMI GATC 2 cut(s) 172, 568
BssT1I CCWWGG 2 cut(s) 42, 213
Bst6I CTCTTC 1 cut(s) 498
BstAFI CTTAAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 213
BstKTI GATC 2 cut(s) 175, 571
BstMBI GATC 2 cut(s) 172, 568
BstSFI CTRYAG 2 cut(s) 138, 189
BstV1I GCAGC 3 cut(s) 203, 259, 412
BstV2I GAAGAC 1 cut(s) 506
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 56, 239
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 240, 448
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 56, 218, 224, 239, 272, 425
CviKI_1 RGCY 6 cut(s) 56, 218, 224, 239, 272, 425
DpnI GATC 2 cut(s) 174, 570
DpnII GATC 2 cut(s) 172, 568
DraIII CACNNNGTG 2 cut(s) 394, 482
EaeI YGGCCR 2 cut(s) 54, 237
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 42, 213
EcoT14I CCWWGG 2 cut(s) 42, 213
ErhI CCWWGG 2 cut(s) 42, 213
FaeI CATG 1 cut(s) 217
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 498, 530
FaqI GGGAC 1 cut(s) 461
FatI CATG 1 cut(s) 213
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 192, 273, 426
Fsp4HI GCNGC 3 cut(s) 192, 273, 426
GluI GCNGC 3 cut(s) 192, 273, 426
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 56, 239
Hin1II CATG 1 cut(s) 217
HinfI GANTC 3 cut(s) 314, 350, 375
HphI GGTGA 2 cut(s) 28, 380
Hpy166II GTNNAC 2 cut(s) 95, 388
Hpy188I TCNGA 4 cut(s) 259, 349, 409, 568
Hpy188III TCNNGA 2 cut(s) 182, 583
Hpy8I GTNNAC 2 cut(s) 95, 388
HpyAV CCTTC 2 cut(s) 108, 297
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 191, 275, 441, 533, 563
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 2 cut(s) 172, 568
LguI GCTCTTC 1 cut(s) 498
LpnPI CCDG 5 cut(s) 132, 146, 189, 246, 354
Lsp1109I GCAGC 3 cut(s) 203, 259, 412
LweI GCATC 1 cut(s) 572
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 396, 484
MalI GATC 2 cut(s) 174, 570
MboI GATC 2 cut(s) 172, 568
MboII GAAGA 4 cut(s) 217, 323, 485, 506
MlsI TGGCCA 2 cut(s) 56, 239
MluCI AATT 5 cut(s) 4, 30, 436, 501, 537
MluNI TGGCCA 2 cut(s) 56, 239
MnlI CCTC 4 cut(s) 55, 79, 117, 415
Mox20I TGGCCA 2 cut(s) 56, 239
MscI TGGCCA 2 cut(s) 56, 239
MseI TTAA 4 cut(s) 9, 293, 468, 504
Msp20I TGGCCA 2 cut(s) 56, 239
MspA1I CMGCKG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 172, 568
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 314, 350, 375
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 193, 274, 427
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 9, 293, 468, 504
SatI GCNGC 3 cut(s) 192, 273, 426
Sau3AI GATC 2 cut(s) 172, 568
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 2 cut(s) 138, 189
SmlI CTYRAG 2 cut(s) 292, 581
SmoI CTYRAG 2 cut(s) 292, 581
Sse9I AATT 5 cut(s) 4, 30, 436, 501, 537
StyI CCWWGG 2 cut(s) 42, 213
TaiI ACGT 1 cut(s) 94
TasI AATT 5 cut(s) 4, 30, 436, 501, 537
TfiI GAWTC 3 cut(s) 314, 350, 375
Tru1I TTAA 4 cut(s) 9, 293, 468, 504
Tru9I TTAA 4 cut(s) 9, 293, 468, 504
TscAI CASTG 2 cut(s) 240, 448
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 3 cut(s) 191, 272, 425
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 17, 426
TspRI CASTG 2 cut(s) 240, 448
Tth111I GACNNNGTC 1 cut(s) 452
Vha464I CTTAAG 1 cut(s) 292
XapI RAATTY 3 cut(s) 4, 30, 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.