RLG00000015101

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000102
Physical Location & Seq
Reverse (-)
61732493 .. 61734290
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015101

Sequence Viewer

Length: 315 bp
ATGACTGTGTTGCTACAAGCAGTTCTTCTAGTCTTCCTCTTTCACATTAATGATGCTTCCAGGTCAATCATCACCAGCTTACCCGGCTTTCCCGGCGACCTACCATTCAGACTTGAAACTGGGTTCCTTACCCAGCTCTACCAATTTACATATCGAGATGCCGATTCCATCTCGTTCAATGACTCGGCCCCAGAAAACTCCGCCGGAGCCCGAACCGTAACCTTCTCCACCGATTCCTCCTCCTGGCTTGCATTTTCCAATCACTTGGCTTCGGCGATCGGAAAAGATGTTCTTTGGTCTGCCGGCGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

105

Amino Acids

11.22

Weight (kDa)

4.69

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 306
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 116, 178
AjnI CCWGG 2 cut(s) 59, 242
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 78, 136
AluI AGCT 2 cut(s) 78, 136
AoxI GGCC 1 cut(s) 186
AseI ATTAAT 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 2 cut(s) 84, 93
AsuHPI GGTGA 1 cut(s) 64
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 25
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 61, 244
BcnI CCSGG 2 cut(s) 84, 93
BfaI CTAG 1 cut(s) 29
Bme1390I CCNGG 4 cut(s) 61, 84, 93, 244
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 125, 189, 208
BmrFI CCNGG 4 cut(s) 61, 84, 93, 244
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 43, 148
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 84, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 2 cut(s) 61, 244
BseLI CCNNNNNNNGG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 279
BsiSI CCGG 4 cut(s) 84, 93, 204, 303
BslI CCNNNNNNNGG 1 cut(s) 243
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 2 cut(s) 201, 306
BspANI GGCC 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 125, 189, 208
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 61, 244
Bst4CI ACNGT 2 cut(s) 7, 217
BstC8I GCNNGC 2 cut(s) 249, 304
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 84, 93
BstNI CCWGG 2 cut(s) 61, 244
BstSCI CCNGG 4 cut(s) 59, 82, 91, 242
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 249, 304
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 187
CviJI RGCY 8 cut(s) 78, 87, 136, 188, 209, 247, 269, 312
CviKI_1 RGCY 8 cut(s) 78, 87, 136, 188, 209, 247, 269, 312
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 59, 242
EcoT38I GRGCYC 1 cut(s) 211
FaiI YATR 1 cut(s) 151
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 276, 308
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 1 cut(s) 29
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 188
HapII CCGG 4 cut(s) 84, 93, 204, 303
HinfI GANTC 3 cut(s) 164, 182, 233
HpaII CCGG 4 cut(s) 84, 93, 204, 303
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 110, 281
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 7, 217
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 93
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 206
LweI GCATC 2 cut(s) 43, 148
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 17, 25
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 3 cut(s) 47, 247, 250
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 4 cut(s) 84, 93, 204, 303
MspR9I CCNGG 4 cut(s) 61, 84, 93, 244
MvaI CCWGG 2 cut(s) 61, 244
MwoI GCNNNNNNNGC 2 cut(s) 84, 93
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 2 cut(s) 84, 93
NdeII GATC 1 cut(s) 276
NgoMIV GCCGGC 1 cut(s) 302
NlaIV GGNNCC 3 cut(s) 125, 189, 208
NmeAIII GCCGAG 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 164, 233
Ple19I CGATCG 1 cut(s) 279
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 59, 242
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 2 cut(s) 59, 242
PspN4I GGNNCC 3 cut(s) 125, 189, 208
PspPI GGNCC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 61, 84, 93, 244
SduI GDGCHC 1 cut(s) 211
SetI ASST 5 cut(s) 65, 80, 102, 138, 224
SfaNI GCATC 2 cut(s) 43, 148
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 201, 306
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 59, 82, 91, 242
TaaI ACNGT 2 cut(s) 7, 217
TaqI TCGA 1 cut(s) 154
TasI AATT 1 cut(s) 143
TfiI GAWTC 2 cut(s) 164, 233
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
VspI ATTAAT 1 cut(s) 48
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.