Prupe.6G218600_v2.0.a1

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000102
Physical Location & Seq
Forward (+)
22521623 .. 22522989
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218600.1

Sequence Viewer

Length: 504 bp
ATGGGAGAAGAGTTTTGTGCAAAATATATCAAGTGGCTTTGTTTGCGTATGATCTTTAATCTGCTGCTTTGCTCAAAATCACAGCTGGTTACTTGCACAATTATCAAGTCCCTGCCAGGATTTCCTGGTTCCCTTCCCTTCAAACTTGAAACTGGGTATATTGGGGCTGATGAGAAAGAAGATGTGCAGCTCTTCTATTACTTTGTTGAATCTGAAAGAAACCCAAGGGATGATCCTCTTATGCTCTGGCTCACTGGTGGTCCTACTTGCTCTGGTCTATCTGGGGTTGCTTTTGAGATTGGCCCTATGAAGTTTAACATGGTAGAGTATAATGGCAGCTTACCAACTTTTGTGATTAATCCATACTCATGGACAAAGGTTTCCAGCATAATATTTGTGGATGCACCTATTGGCACCGGGTTTTCATATTCAAGAAGCTCGAAAGGGTCCAGTGATACTTTGTTTGTTAATCATATTTATGGTTTCCTCAAGAAGGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

6.57

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AclWI GGATC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 493
AgsI TTSAA 4 cut(s) 142, 149, 209, 432
AjnI CCWGG 2 cut(s) 115, 124
AluBI AGCT 4 cut(s) 85, 190, 339, 438
AluI AGCT 4 cut(s) 85, 190, 339, 438
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 64, 187, 336
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 260, 302, 447
AsuC2I CCSGG 1 cut(s) 418
AvaII GGWCC 2 cut(s) 260, 447
BanI GGYRCC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 51, 199, 348
BciT130I CCWGG 2 cut(s) 117, 126
BcnI CCSGG 1 cut(s) 418
BisI GCNGC 3 cut(s) 65, 188, 337
BlsI GCNGC 3 cut(s) 66, 189, 338
Bme1390I CCNGG 3 cut(s) 117, 126, 418
Bme18I GGWCC 2 cut(s) 260, 447
BmgT120I GGNCC 3 cut(s) 260, 302, 447
BmiI GGNNCC 3 cut(s) 130, 415, 448
BmrFI CCNGG 3 cut(s) 117, 126, 418
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 3 cut(s) 157, 259, 450
BseBI CCWGG 2 cut(s) 117, 126
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 235, 406
BseLI CCNNNNNNNGG 1 cut(s) 493
BseNI ACTGG 3 cut(s) 157, 259, 450
BseXI GCAGC 3 cut(s) 51, 199, 348
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 51, 232
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 130, 415, 448
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 413
BsrI ACTGG 3 cut(s) 157, 259, 450
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 51, 232
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 117, 126
Bst6I CTCTTC 2 cut(s) 3, 197
BstENI CCTNNNNNAGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 235, 406
BstKTI GATC 2 cut(s) 54, 235
BstMBI GATC 2 cut(s) 51, 232
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 2 cut(s) 117, 126
BstSCI CCNGG 3 cut(s) 115, 124, 416
BstV1I GCAGC 3 cut(s) 51, 199, 348
BstXI CCANNNNNNTGG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 235, 406
BtsIMutI CAGTG 2 cut(s) 252, 457
Cfr13I GGNCC 3 cut(s) 260, 302, 447
CviAII CATG 2 cut(s) 319, 369
CviJI RGCY 8 cut(s) 37, 85, 167, 190, 250, 303, 339, 438
CviKI_1 RGCY 8 cut(s) 37, 85, 167, 190, 250, 303, 339, 438
DpnI GATC 2 cut(s) 53, 234
DpnII GATC 2 cut(s) 51, 232
Eam1104I CTCTTC 2 cut(s) 3, 197
EarI CTCTTC 2 cut(s) 3, 197
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 260, 447
EcoNI CCTNNNNNAGG 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 115, 124
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 322, 372
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 318, 368
Fnu4HI GCNGC 3 cut(s) 65, 188, 337
FokI GGATG 2 cut(s) 242, 413
Fsp4HI GCNGC 3 cut(s) 65, 188, 337
GluI GCNGC 3 cut(s) 65, 188, 337
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 417
Hin1II CATG 2 cut(s) 322, 372
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 417
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 432, 490
HpyAV CCTTC 3 cut(s) 143, 148, 487
HpyCH4V TGCA 4 cut(s) 20, 96, 187, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 322, 372
Kzo9I GATC 2 cut(s) 51, 232
LguI GCTCTTC 1 cut(s) 197
Lsp1109I GCAGC 3 cut(s) 51, 199, 348
LweI GCATC 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 53, 234
MboI GATC 2 cut(s) 51, 232
MboII GAAGA 3 cut(s) 20, 184, 191
MluCI AATT 2 cut(s) 99, 499
MnlI CCTC 2 cut(s) 246, 497
MseI TTAA 4 cut(s) 57, 315, 357, 468
MslI CAYNNNNRTG 2 cut(s) 367, 477
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 3 cut(s) 117, 126, 418
MvaI CCWGG 2 cut(s) 117, 126
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 418
NdeII GATC 2 cut(s) 51, 232
NlaIII CATG 2 cut(s) 322, 372
NlaIV GGNNCC 3 cut(s) 130, 415, 448
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 66, 189, 338
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 115, 124
PspGI CCWGG 2 cut(s) 115, 124
PspN4I GGNNCC 3 cut(s) 130, 415, 448
PspPI GGNCC 3 cut(s) 260, 302, 447
PvuII CAGCTG 1 cut(s) 85
RseI CAYNNNNRTG 2 cut(s) 367, 477
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 57, 315, 357, 468
SatI GCNGC 3 cut(s) 65, 188, 337
Sau3AI GATC 2 cut(s) 51, 232
Sau96I GGNCC 3 cut(s) 260, 302, 447
ScrFI CCNGG 3 cut(s) 117, 126, 418
SetI ASST 7 cut(s) 87, 192, 341, 381, 409, 440, 498
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 2 cut(s) 260, 447
SmiMI CAYNNNNRTG 2 cut(s) 367, 477
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 99, 499
SspI AATATT 1 cut(s) 393
StyD4I CCNGG 3 cut(s) 115, 124, 416
StyI CCWWGG 1 cut(s) 224
TaqI TCGA 1 cut(s) 440
TasI AATT 2 cut(s) 99, 499
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 4 cut(s) 57, 315, 357, 468
Tru9I TTAA 4 cut(s) 57, 315, 357, 468
TscAI CASTG 2 cut(s) 259, 457
TseI GCWGC 3 cut(s) 64, 187, 336
TspDTI ATGAA 2 cut(s) 323, 414
TspRI CASTG 2 cut(s) 259, 457
VpaK11BI GGWCC 2 cut(s) 260, 447
VspI ATTAAT 1 cut(s) 357
XagI CCTNNNNNAGG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.