Rmu_sc0003692.1_g000002

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003692.1
OG0000102
Physical Location & Seq
Reverse (-)
4558 .. 4984
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003692.1_g000002.1.cds

Sequence Viewer

Length: 327 bp
atggacgacgaccaaacaatcaaaacaccttttagctcagccagcaggtgcatcatgactgcgttgctgcaagcacttgttctagtcctcctccttcgcattgctgcttccaggttcaacatcaccagcttacccggctttcccggtgaccttccattcagactggaaactgggtacatcggagttggagactctgacaacgtgcaactattctactacttcattgagtctgaaggaactccggagaatggcccgcttatgccttggctcagcggaggtcctggctgttctgatttttctgccgtcgcatatgaaattggtgcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

108

Amino Acids

11.63

Weight (kDa)

4.1

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 254, 273
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 2 cut(s) 110, 280
AluBI AGCT 2 cut(s) 36, 129
AluI AGCT 2 cut(s) 36, 129
Alw26I GTCTC 1 cut(s) 183
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 67, 104
AspS9I GGNCC 2 cut(s) 251, 278
AsuC2I CCSGG 2 cut(s) 135, 144
AsuHPI GGTGA 2 cut(s) 115, 158
AvaII GGWCC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 54, 91
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 2 cut(s) 112, 282
BcnI CCSGG 2 cut(s) 135, 144
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 2 cut(s) 68, 105
BlpI GCTNAGC 2 cut(s) 37, 269
BlsI GCNGC 2 cut(s) 69, 106
Bme1390I CCNGG 4 cut(s) 112, 135, 144, 282
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 251, 278
BmrFI CCNGG 4 cut(s) 112, 135, 144, 282
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 180
Bpu1102I GCTNAGC 2 cut(s) 37, 269
BpuMI CCSGG 2 cut(s) 135, 144
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 168, 175
Bse3DI GCAATG 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 2 cut(s) 112, 282
BseDI CCNNGG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 51, 283
BseNI ACTGG 2 cut(s) 168, 175
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 54, 91
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 135, 144, 242
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 241
Bsp1720I GCTNAGC 2 cut(s) 37, 269
BspACI CCGC 2 cut(s) 254, 273
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 2 cut(s) 50, 282
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 2 cut(s) 168, 175
BssECI CCNNGG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 112, 282
BstC8I GCNNGC 3 cut(s) 43, 72, 254
BstDEI CTNAG 2 cut(s) 37, 269
BstEII GGTNACC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 42, 135
BstNI CCWGG 2 cut(s) 112, 282
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 4 cut(s) 110, 133, 142, 280
BstV1I GCAGC 2 cut(s) 54, 91
BsuRI GGCC 1 cut(s) 252
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 43, 72, 254
CciI TCATGA 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 251, 278
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 36, 41, 129, 138, 252, 268, 285
CviKI_1 RGCY 7 cut(s) 36, 41, 129, 138, 252, 268, 285
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 37, 269
Eco130I CCWWGG 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 110, 280
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 260, 310, 312
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 261
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 68, 105
Fsp4HI GCNGC 2 cut(s) 68, 105
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 68, 105
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 135, 144, 242
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 191, 227
HpaII CCGG 3 cut(s) 135, 144, 242
HphI GGTGA 2 cut(s) 115, 158
Hpy188I TCNGA 5 cut(s) 161, 182, 196, 232, 292
Hpy188III TCNNGA 2 cut(s) 55, 242
Hpy99I CGWCG 2 cut(s) 11, 308
HpyAV CCTTC 3 cut(s) 104, 161, 227
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 51, 70, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 135
HpyF3I CTNAG 2 cut(s) 37, 269
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 58
Kpn2I TCCGGA 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 54, 91
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 146
MluCI AATT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 185, 236
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 3 cut(s) 98, 101, 269
MroI TCCGGA 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 3 cut(s) 135, 144, 242
MspR9I CCNGG 4 cut(s) 112, 135, 144, 282
MvaI CCWGG 2 cut(s) 112, 282
MwoI GCNNNNNNNGC 2 cut(s) 42, 135
NciI CCSGG 2 cut(s) 135, 144
NdeI CATATG 1 cut(s) 310
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 146
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 69, 106
PleI GAGTC 2 cut(s) 185, 235
PpsI GAGTC 2 cut(s) 185, 235
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 110, 280
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 110, 280
PspPI GGNCC 2 cut(s) 251, 278
PspPPI RGGWCCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 2 cut(s) 68, 105
Sau96I GGNCC 2 cut(s) 251, 278
SchI GAGTC 2 cut(s) 185, 236
ScrFI CCNGG 4 cut(s) 112, 135, 144, 282
SetI ASST 8 cut(s) 31, 38, 50, 116, 131, 153, 204, 280
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 1 cut(s) 278
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 254, 273
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 4 cut(s) 110, 133, 142, 280
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 204
TasI AATT 1 cut(s) 315
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 67, 104
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 211, 327
VpaK11BI GGWCC 1 cut(s) 278
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.