Rorug05G0535200

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
72362048 .. 72363640
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0535200.1

Sequence Viewer

Length: 507 bp
ATGGCTCACACAATTGCTCACACCACTCTCGGCCTCACTCAGATTTCTCCGGTCTTTGAAGCCCCAAAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGCAGGTGTTGGTGTTACGCAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTCGAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGTGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAGCGACAAAGACTACTTAAGCAAGTGATATTGCTATGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATATTGCCAATGTTCTCACACCTGAGGTTCTGGGCTGTTGGTTGGGCTGATTGGGAAAAGGTGAAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCAATTGCTCGCAATAGGCTTGGAAATCTGGTTTCTTTCACAGAAGGTTAAGTATTGGTGGATGGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.14

Weight (kDa)

9.59

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AccII CGCG 1 cut(s) 80
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 59, 184, 404, 437
AluBI AGCT 3 cut(s) 70, 190, 226
AluI AGCT 3 cut(s) 70, 190, 226
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 247, 250, 253, 256
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 397
AsuII TTCGAA 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 347
BbvI GCAGC 4 cut(s) 234, 262, 265, 268
BccI CCATC 1 cut(s) 490
BfmI CTRYAG 1 cut(s) 248
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 4 cut(s) 248, 251, 254, 257
BlsI GCNGC 4 cut(s) 249, 252, 255, 258
Bpu14I TTCGAA 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 2 cut(s) 49, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 53, 338
BseXI GCAGC 4 cut(s) 234, 262, 265, 268
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 50, 430
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 151
Bsp68I TCGCGA 1 cut(s) 80
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 52, 339
BspFNI CGCG 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 298, 444
BstDEI CTNAG 3 cut(s) 39, 347, 396
BstF5I GGATG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 253, 256
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 4 cut(s) 234, 262, 265, 268
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 501
BtuMI TCGCGA 1 cut(s) 80
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 298, 444
DdeI CTNAG 3 cut(s) 39, 347, 396
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 347
FaiI YATR 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 248, 251, 254, 257
Fsp4HI GCNGC 4 cut(s) 248, 251, 254, 257
GluI GCNGC 4 cut(s) 248, 251, 254, 257
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 50, 430
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 50, 430
HphI GGTGA 1 cut(s) 397
Hpy188I TCNGA 4 cut(s) 42, 156, 177, 308
Hpy188III TCNNGA 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 130, 472, 495
HpyCH4V TGCA 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 256
HpyF3I CTNAG 3 cut(s) 39, 347, 396
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 414
LpnPI CCDG 8 cut(s) 63, 102, 176, 211, 340, 359, 443, 448
Lsp1109I GCAGC 4 cut(s) 234, 262, 265, 268
MaeIII GTNAC 2 cut(s) 97, 127
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 196
MfeI CAATTG 2 cut(s) 12, 437
MluCI AATT 4 cut(s) 12, 164, 404, 437
MnlI CCTC 5 cut(s) 44, 237, 302, 314, 342
MseI TTAA 3 cut(s) 230, 273, 483
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 2 cut(s) 50, 430
MunI CAATTG 2 cut(s) 12, 437
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 253, 256
NdeII GATC 1 cut(s) 151
NmeAIII GCCGAG 1 cut(s) 9
NruI TCGCGA 1 cut(s) 80
NspV TTCGAA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 249, 252, 255, 258
PstI CTGCAG 1 cut(s) 252
RruI TCGCGA 1 cut(s) 80
SaqAI TTAA 3 cut(s) 230, 273, 483
SatI GCNGC 4 cut(s) 248, 251, 254, 257
Sau3AI GATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 12, 164, 404, 437
SspI AATATT 1 cut(s) 327
TaqI TCGA 2 cut(s) 161, 168
TasI AATT 4 cut(s) 12, 164, 404, 437
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 230, 273, 483
Tru9I TTAA 3 cut(s) 230, 273, 483
TseI GCWGC 4 cut(s) 247, 250, 253, 256
TspGWI ACGGA 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 272
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.