RchiOBHm_Chr6g0249021

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000102
Physical Location & Seq
Forward (+)
4888877 .. 4890607
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22323

Sequence Viewer

Length: 636 bp
ATGACCATGTTGGTACAAGCCCTTGTTCTAGTCCTCCTTTTTCATATTGTTTCTTCCAGGTCCAACATCACCACCTTACCCGGCTTTCCGGGTGACCTTCCATTCAAACTTGAAACTGGGTACATCGGAGTTGGAAACTTGGACGATGTGCAACTATTCTATTACTTCATTGAGTCCGAAGGAACTCCAGAGGATGATCCTCTTGTGCTTTGGCTCACCGGTGGTCCTGGCTGTTCTGGTTTTTCTGCCATTGTATACGAAAATATTGGTCCACTATCATTTGACTATGCAGATCCCTTTGACAACAAGCCACAACTCAAGTTGAATCCATACTCATGGACGAAGGTTGCCAACATAATATTTATAGATGCCCCTGTGGGGACAGGGTTCTCATACGCAAAAAGTTGGGAAAGATACCCCATTCTGAATGACACACTCTCAGCTGCACAAACATATCAGTTTCTTAGAAAGTGGCTAGTGGATCATCCCAGGTTCCTCTCTAATCCACTCTATATTGCTGGAGATTCTTATGCAGGCATAGTTCTTCCGATAATCGTTCAAGAAGTATCTGATGGTAATAGAGATGGAGTTGAACCAGTAATGAATCTCCAAGTACATGTTCTTGCCGGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

211

Amino Acids

23.37

Weight (kDa)

4.45

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 27 - 205 3.8e-62 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AclWI GGATC 3 cut(s) 191, 287, 489
AfaI GTAC 3 cut(s) 15, 122, 615
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 616
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 5 cut(s) 106, 113, 325, 560, 593
AjnI CCWGG 3 cut(s) 56, 226, 488
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
AlwI GGATC 3 cut(s) 191, 287, 489
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 1 cut(s) 443
AsiGI ACCGGT 1 cut(s) 218
AspS9I GGNCC 3 cut(s) 60, 224, 269
AsuC2I CCSGG 2 cut(s) 81, 90
AsuHPI GGTGA 3 cut(s) 61, 104, 208
AvaII GGWCC 3 cut(s) 60, 224, 269
BbvI GCAGC 1 cut(s) 430
BccI CCATC 2 cut(s) 566, 578
BciT130I CCWGG 3 cut(s) 58, 228, 490
BcnI CCSGG 2 cut(s) 81, 90
BfaI CTAG 2 cut(s) 29, 476
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 5 cut(s) 58, 81, 90, 228, 490
Bme18I GGWCC 3 cut(s) 60, 224, 269
BmgT120I GGNCC 3 cut(s) 60, 224, 269
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 5 cut(s) 58, 81, 90, 228, 490
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 2 cut(s) 171, 540
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 81, 90
BsaJI CCNNGG 1 cut(s) 488
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 2 cut(s) 218, 626
Bse1I ACTGG 2 cut(s) 121, 596
BseBI CCWGG 3 cut(s) 58, 228, 490
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 2 cut(s) 199, 484
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 121, 596
BseXI GCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 1 cut(s) 630
BshTI ACCGGT 1 cut(s) 218
BsiSI CCGG 4 cut(s) 81, 89, 219, 627
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 630
Bsp143I GATC 3 cut(s) 196, 292, 481
BspANI GGCC 1 cut(s) 630
BspCNI CTCAG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 494
BspPI GGATC 3 cut(s) 191, 287, 489
BsrFI RCCGGY 2 cut(s) 218, 626
BsrI ACTGG 2 cut(s) 121, 596
BssAI RCCGGY 2 cut(s) 218, 626
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 3 cut(s) 196, 292, 481
BssNAI GTATAC 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 256
Bst2UI CCWGG 3 cut(s) 58, 228, 490
BstC8I GCNNGC 2 cut(s) 535, 628
BstDEI CTNAG 2 cut(s) 439, 464
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 2 cut(s) 199, 484
BstKTI GATC 3 cut(s) 199, 295, 484
BstMBI GATC 3 cut(s) 196, 292, 481
BstNI CCWGG 3 cut(s) 58, 228, 490
BstNSI RCATGY 1 cut(s) 620
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 5 cut(s) 56, 79, 88, 226, 488
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 1 cut(s) 292
BstZ17I GTATAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 630
BtsCI GGATG 2 cut(s) 199, 484
Cac8I GCNNGC 2 cut(s) 535, 628
Cfr10I RCCGGY 2 cut(s) 218, 626
Cfr13I GGNCC 3 cut(s) 60, 224, 269
Csp6I GTAC 3 cut(s) 14, 121, 614
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 3 cut(s) 7, 336, 617
CviJI RGCY 8 cut(s) 20, 84, 214, 231, 310, 443, 475, 630
CviKI_1 RGCY 8 cut(s) 20, 84, 214, 231, 310, 443, 475, 630
CviQI GTAC 3 cut(s) 14, 121, 614
DdeI CTNAG 2 cut(s) 439, 464
DpnI GATC 3 cut(s) 198, 294, 483
DpnII GATC 3 cut(s) 196, 292, 481
Eco47I GGWCC 3 cut(s) 60, 224, 269
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 56, 226, 488
FaeI CATG 3 cut(s) 10, 339, 620
FaqI GGGAC 1 cut(s) 394
FatI CATG 3 cut(s) 6, 335, 616
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 206, 471
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 2 cut(s) 29, 476
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 171, 540
HaeIII GGCC 1 cut(s) 630
HapII CCGG 4 cut(s) 81, 89, 219, 627
Hin1II CATG 3 cut(s) 10, 339, 620
HinfI GANTC 4 cut(s) 173, 325, 524, 604
HpaII CCGG 4 cut(s) 81, 89, 219, 627
HphI GGTGA 3 cut(s) 61, 104, 208
Hpy166II GTNNAC 2 cut(s) 256, 272
Hpy188I TCNGA 5 cut(s) 128, 178, 426, 549, 571
Hpy188III TCNNGA 2 cut(s) 188, 560
Hpy8I GTNNAC 2 cut(s) 256, 272
HpyAV CCTTC 3 cut(s) 107, 173, 337
HpyCH4V TGCA 4 cut(s) 151, 290, 446, 533
HpyF3I CTNAG 2 cut(s) 439, 464
Hsp92II CATG 3 cut(s) 10, 339, 620
KroI GCCGGC 1 cut(s) 626
KroNI GCCGGC 1 cut(s) 628
Kzo9I GATC 3 cut(s) 196, 292, 481
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 29, 476
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 198, 294, 483
MboI GATC 3 cut(s) 196, 292, 481
MboII GAAGA 2 cut(s) 45, 536
MflI RGATCY 1 cut(s) 292
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 87, 112
MnlI CCTC 4 cut(s) 44, 184, 210, 506
MroNI GCCGGC 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 81, 89, 219, 627
MspR9I CCNGG 5 cut(s) 58, 81, 90, 228, 490
MvaI CCWGG 3 cut(s) 58, 228, 490
NaeI GCCGGC 1 cut(s) 628
NciI CCSGG 2 cut(s) 81, 90
NdeII GATC 3 cut(s) 196, 292, 481
NgoMIV GCCGGC 1 cut(s) 626
NlaIII CATG 3 cut(s) 10, 339, 620
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 620
PciI ACATGT 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 628
PfeI GAWTC 3 cut(s) 325, 524, 604
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 616
Psp6I CCWGG 3 cut(s) 56, 226, 488
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 3 cut(s) 56, 226, 488
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 3 cut(s) 60, 224, 269
PsuI RGATCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 15, 122, 615
RsaNI GTAC 3 cut(s) 14, 121, 614
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 3 cut(s) 196, 292, 481
Sau96I GGNCC 3 cut(s) 60, 224, 269
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 5 cut(s) 58, 81, 90, 228, 490
SetI ASST 6 cut(s) 62, 77, 99, 348, 445, 494
SfaNI GCATC 1 cut(s) 358
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 3 cut(s) 60, 224, 269
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SspI AATATT 2 cut(s) 265, 360
SspMI CTAG 2 cut(s) 29, 476
StyD4I CCNGG 5 cut(s) 56, 79, 88, 226, 488
TatI WGTACW 1 cut(s) 613
TfiI GAWTC 3 cut(s) 325, 524, 604
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 32, 157, 617
VpaK11BI GGWCC 3 cut(s) 60, 224, 269
XceI RCATGY 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 29, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.