pycom08g20430
TCP Family

T-complex protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000102
Physical Location & Seq
Forward (+)
20241167 .. 20242902
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20430.2

Sequence Viewer

Length: 369 bp
ATGGTGGGGGGCGGCGGTATAGCCATGGATTTTCCGGCCGAAGAGACGGCGTCGTCCTTCTCTTCGCCTCCGAGTCTTCCCACGAGGCTCAGACGGAGGCTCAGCCTTGTCGACTCAAACAAGACTCCAACCACCGCCGAACAGATTCAGACCAAGCTAAGACTCGCCGATCTTCGCCGTCAGGAACACTATGAAAAGTTGTCAAGCAAGGCACGAGCAAAGCCGAGGAATCCCTCACGATCTTCATCTGAAGGGGAAGACCTTGGCCAGCGCCTAGAAGCCAAGCTACAAGCTGCTGAGAAGAAAAGTTGGTGCATAAATATCTCGAATGCCCAACTTGCTGAGTGCAAGATGGAAAATCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tcp11

Protein Analysis

123

Amino Acids

13.49

Weight (kDa)

9.51

Isoelectric Point (pI)

79.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 111
AciI CCGC 3 cut(s) 12, 15, 135
AcoI YGGCCR 2 cut(s) 36, 265
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 50
AluBI AGCT 3 cut(s) 157, 286, 293
AluI AGCT 3 cut(s) 157, 286, 293
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 2 cut(s) 36, 265
ApeKI GCWGC 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 2 cut(s) 82, 213
BbsI GAAGAC 2 cut(s) 68, 264
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 346
BceAI ACGGC 2 cut(s) 63, 162
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 274
BisI GCNGC 2 cut(s) 13, 294
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 14, 295
BpiI GAAGAC 2 cut(s) 68, 264
Bpu1102I GCTNAGC 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 24, 224, 262
Bse8I GATNNNNATC 1 cut(s) 244
BseDI CCNNGG 3 cut(s) 24, 224, 262
BseJI GATNNNNATC 1 cut(s) 244
BseMII CTCAG 4 cut(s) 103, 115, 288, 333
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 38, 267
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 38, 267
Bsp143I GATC 2 cut(s) 169, 239
Bsp1720I GCTNAGC 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 3 cut(s) 12, 15, 135
BspANI GGCC 2 cut(s) 38, 267
BspCNI CTCAG 4 cut(s) 102, 114, 289, 334
BssECI CCNNGG 3 cut(s) 24, 224, 262
BssMI GATC 2 cut(s) 169, 239
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 2 cut(s) 82, 213
BssT1I CCWWGG 2 cut(s) 24, 262
Bst2BI CACGAG 2 cut(s) 82, 213
Bst6I CTCTTC 2 cut(s) 36, 67
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 5 cut(s) 89, 101, 158, 297, 342
BstDSI CCRYGG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 2 cut(s) 172, 242
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 169, 239
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 2 cut(s) 68, 264
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 2 cut(s) 38, 267
BtgI CCRYGG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 273
CseI GACGC 1 cut(s) 39
CviAII CATG 1 cut(s) 25
DdeI CTNAG 5 cut(s) 89, 101, 158, 297, 342
DpnI GATC 2 cut(s) 171, 241
DpnII GATC 2 cut(s) 169, 239
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 36, 265
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 36, 67
EarI CTCTTC 2 cut(s) 36, 67
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 24, 262
Eco52I CGGCCG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 24, 262
ErhI CCWWGG 2 cut(s) 24, 262
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 20, 26, 192, 317
FatI CATG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 13, 294
Fsp4HI GCNGC 2 cut(s) 13, 294
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 272
GluI GCNGC 2 cut(s) 13, 294
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 38, 267
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 6 cut(s) 73, 113, 124, 145, 162, 229
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 72, 92, 150, 250
Hpy188III TCNNGA 3 cut(s) 182, 237, 325
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 67, 245
HpyCH4V TGCA 2 cut(s) 315, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 5 cut(s) 89, 101, 158, 297, 342
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 169, 239
LpnPI CCDG 3 cut(s) 48, 167, 281
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 1 cut(s) 275
MalI GATC 2 cut(s) 171, 241
MboI GATC 2 cut(s) 169, 239
MboII GAAGA 7 cut(s) 53, 54, 68, 164, 234, 269, 313
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 4 cut(s) 82, 107, 118, 156
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 5 cut(s) 78, 78, 90, 219, 244
Mox20I TGGCCA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 24
NdeII GATC 2 cut(s) 169, 239
NlaIII CATG 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 249
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 145, 229
PflFI GACNNNGTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 14, 295
PleI GAGTC 4 cut(s) 81, 107, 118, 156
PpsI GAGTC 4 cut(s) 81, 107, 118, 156
PsyI GACNNNGTC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 110
SatI GCNGC 2 cut(s) 13, 294
Sau3AI GATC 2 cut(s) 169, 239
SchI GAGTC 4 cut(s) 82, 107, 118, 156
SetI ASST 4 cut(s) 159, 264, 288, 295
SsiI CCGC 3 cut(s) 12, 15, 135
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 2 cut(s) 24, 262
TaqI TCGA 2 cut(s) 111, 326
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 145, 229
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 207, 234
TspGWI ACGGA 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.