Rh2DG683600

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000102
Physical Location & Seq
Reverse (-)
90275646 .. 90284625
8980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG683600.1

Sequence Viewer

Length: 930 bp
ATGCTTGGTGCTTCTTCAAAATTAACCCCAAACAGGCTGGGTTCGATTTCGGATTTCTGGCCCCCTGCATCATTTTTACAAGCCATGGAAGAGTACGTCAGAGAAGCTCCCCGTGTCTCAATAGTTCGCAAGGAGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCAAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTAAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCCGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCAGTGGCCAACATAATCTATACTTCCGATACAAAATCAGCTGCACAGACCTATACTTTCTTAAGAAAGGGAAGGAGAGAAGAATCACAATGGTTATATGCACACCCAAGGTTTCAGGGAAATCAACTGTACATTGGTGGTGACTCATATTCAGGACTTATTGTTCCCATTCTTCTTAAGAATATACTAGAAGGTCACAGTCGGTCAAATTCTGGGTCCAGGCCAAGAATGCAACTCCAAGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATATACTTTTCACGAAGAGAAGAGCAAACATCTACATCAACTCAAGACCTAAAACAAACTTAGAAAGACAAAACCAAACAGAGATTTTACAACACTCAAACGTTGAGTCAAGGAATCACGTGAAGATTAACAATGAACACTACATGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

309

Amino Acids

34.69

Weight (kDa)

8.36

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 124 - 299 3.5e-28 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 879
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 2 cut(s) 174, 357
AcsI RAATTY 2 cut(s) 150, 559
AcvI CACGTG 1 cut(s) 898
AdeI CACNNNGTG 2 cut(s) 664, 752
AfaI GTAC 2 cut(s) 95, 482
AfiI CCNNNNNNNGG 1 cut(s) 33
AflII CTTAAG 2 cut(s) 412, 527
AgsI TTSAA 4 cut(s) 18, 266, 289, 767
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 569
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 3 cut(s) 107, 344, 392
AluI AGCT 3 cut(s) 107, 344, 392
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 287
AoxI GGCC 4 cut(s) 59, 174, 357, 572
ApeKI GCWGC 3 cut(s) 311, 392, 695
ApoI RAATTY 2 cut(s) 150, 559
ArsI GACNNNNNNTTYG 4 cut(s) 551, 583, 869, 901
AspS9I GGNCC 2 cut(s) 60, 567
AsuHPI GGTGA 3 cut(s) 148, 503, 650
AvaII GGWCC 1 cut(s) 567
BalI TGGCCA 2 cut(s) 176, 359
BbrPI CACGTG 1 cut(s) 898
BbvI GCAGC 3 cut(s) 323, 379, 682
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 2 cut(s) 258, 309
BfrI CTTAAG 2 cut(s) 412, 527
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 3 cut(s) 312, 393, 696
BlsI GCNGC 3 cut(s) 313, 394, 697
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 60, 567
BmiI GGNNCC 2 cut(s) 62, 568
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpuEI CTTGAG 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 898
BsaJI CCNNGG 5 cut(s) 84, 162, 333, 458, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 3 cut(s) 239, 353, 611
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 5 cut(s) 84, 162, 333, 458, 589
BseLI CCNNNNNNNGG 1 cut(s) 33
BseNI ACTGG 3 cut(s) 239, 353, 611
BseXI GCAGC 3 cut(s) 323, 379, 682
BseYI CCCAGC 2 cut(s) 37, 280
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 4 cut(s) 61, 176, 359, 574
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 2 cut(s) 334, 585
BsnI GGCC 4 cut(s) 61, 176, 359, 574
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 2 cut(s) 84, 333
BspANI GGCC 4 cut(s) 61, 176, 359, 574
BspLI GGNNCC 2 cut(s) 62, 568
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 287
BspQI GCTCTTC 2 cut(s) 768, 793
BspTI CTTAAG 2 cut(s) 412, 527
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 3 cut(s) 239, 353, 611
BssECI CCNNGG 5 cut(s) 84, 162, 333, 458, 589
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 5 cut(s) 84, 162, 333, 458, 589
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 480, 551
Bst6I CTCTTC 4 cut(s) 84, 768, 788, 793
BstAFI CTTAAG 2 cut(s) 412, 527
BstAUI TGTACA 1 cut(s) 480
BstBAI YACGTR 1 cut(s) 898
BstDEI CTNAG 1 cut(s) 838
BstDSI CCRYGG 2 cut(s) 84, 333
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 258, 309
BstV1I GCAGC 3 cut(s) 323, 379, 682
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 4 cut(s) 61, 176, 359, 574
BtgI CCRYGG 2 cut(s) 84, 333
BtrI CACGTC 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 2 cut(s) 360, 718
Cfr13I GGNCC 2 cut(s) 60, 567
Csp6I GTAC 2 cut(s) 94, 481
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 3 cut(s) 85, 334, 922
CviQI GTAC 2 cut(s) 94, 481
DdeI CTNAG 1 cut(s) 838
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraIII CACNNNGTG 2 cut(s) 664, 752
EaeI YGGCCR 2 cut(s) 174, 357
Eam1104I CTCTTC 4 cut(s) 84, 768, 788, 793
EarI CTCTTC 4 cut(s) 84, 768, 788, 793
Eco130I CCWWGG 5 cut(s) 84, 162, 333, 458, 589
Eco47I GGWCC 1 cut(s) 567
Eco72I CACGTG 1 cut(s) 898
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 5 cut(s) 84, 162, 333, 458, 589
ErhI CCWWGG 5 cut(s) 84, 162, 333, 458, 589
FaeI CATG 3 cut(s) 88, 337, 925
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 768, 800
FaqI GGGAC 1 cut(s) 731
FatI CATG 3 cut(s) 84, 333, 921
FauNDI CATATG 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 312, 393, 696
Fsp4HI GCNGC 3 cut(s) 312, 393, 696
FspBI CTAG 1 cut(s) 539
GluI GCNGC 3 cut(s) 312, 393, 696
GsaI CCCAGC 2 cut(s) 41, 284
HaeIII GGCC 4 cut(s) 61, 176, 359, 574
Hin1II CATG 3 cut(s) 88, 337, 925
HinfI GANTC 6 cut(s) 434, 494, 620, 645, 884, 892
HphI GGTGA 3 cut(s) 148, 503, 650
Hpy166II GTNNAC 2 cut(s) 215, 658
Hpy188I TCNGA 5 cut(s) 52, 101, 379, 619, 679
Hpy188III TCNNGA 4 cut(s) 302, 504, 790, 822
Hpy8I GTNNAC 2 cut(s) 215, 658
HpyAV CCTTC 3 cut(s) 228, 417, 536
HpyCH4III ACNGT 2 cut(s) 480, 551
HpyCH4IV ACGT 4 cut(s) 96, 211, 879, 897
HpyCH4V TGCA 6 cut(s) 68, 311, 395, 452, 583, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 1 cut(s) 838
HpySE526I ACGT 4 cut(s) 96, 211, 879, 897
Hsp92II CATG 3 cut(s) 88, 337, 925
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 2 cut(s) 768, 793
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 323, 379, 682
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 539
MaeII ACGT 4 cut(s) 96, 211, 879, 897
MaeIII GTNAC 4 cut(s) 491, 545, 666, 754
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 9 cut(s) 6, 101, 337, 443, 515, 755, 805, 810, 913
MlsI TGGCCA 2 cut(s) 176, 359
MluCI AATT 5 cut(s) 20, 150, 559, 706, 771
MluNI TGGCCA 2 cut(s) 176, 359
MlyI GAGTC 2 cut(s) 488, 893
MnlI CCTC 5 cut(s) 127, 175, 199, 237, 685
Mox20I TGGCCA 2 cut(s) 176, 359
MscI TGGCCA 2 cut(s) 176, 359
MseI TTAA 6 cut(s) 23, 413, 528, 738, 774, 906
Msp20I TGGCCA 2 cut(s) 176, 359
MspA1I CMGCKG 1 cut(s) 392
MspCI CTTAAG 2 cut(s) 412, 527
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 2 cut(s) 334, 585
MvaI CCWGG 1 cut(s) 571
MwoI GCNNNNNNNGC 1 cut(s) 580
NcoI CCATGG 2 cut(s) 84, 333
NdeI CATATG 1 cut(s) 652
NdeII GATC 1 cut(s) 292
NlaIII CATG 3 cut(s) 88, 337, 925
NlaIV GGNNCC 2 cut(s) 62, 568
NmuCI GTSAC 3 cut(s) 491, 545, 666
PciSI GCTCTTC 2 cut(s) 768, 793
PctI GAATGC 2 cut(s) 334, 585
PfeI GAWTC 4 cut(s) 434, 620, 645, 892
PflFI GACNNNGTC 1 cut(s) 722
PkrI GCNGC 3 cut(s) 313, 394, 697
PleI GAGTC 2 cut(s) 488, 892
PmaCI CACGTG 1 cut(s) 898
PmlI CACGTG 1 cut(s) 898
PpsI GAGTC 2 cut(s) 488, 892
Ppu21I YACGTR 1 cut(s) 898
Psp1406I AACGTT 1 cut(s) 879
Psp6I CCWGG 1 cut(s) 569
PspCI CACGTG 1 cut(s) 898
PspFI CCCAGC 2 cut(s) 37, 280
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 62, 568
PspPI GGNCC 2 cut(s) 60, 567
PstI CTGCAG 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 95, 482
RsaNI GTAC 2 cut(s) 94, 481
SapI GCTCTTC 2 cut(s) 768, 793
SaqAI TTAA 6 cut(s) 23, 413, 528, 738, 774, 906
SatI GCNGC 3 cut(s) 312, 393, 696
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 2 cut(s) 60, 567
SchI GAGTC 2 cut(s) 488, 893
ScrFI CCNGG 1 cut(s) 571
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 2 cut(s) 258, 309
SinI GGWCC 1 cut(s) 567
SmlI CTYRAG 3 cut(s) 412, 527, 820
SmoI CTYRAG 3 cut(s) 412, 527, 820
Sse9I AATT 5 cut(s) 20, 150, 559, 706, 771
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 5 cut(s) 84, 162, 333, 458, 589
TaaI ACNGT 2 cut(s) 480, 551
TaiI ACGT 4 cut(s) 99, 214, 882, 900
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 543
TasI AATT 5 cut(s) 20, 150, 559, 706, 771
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 4 cut(s) 434, 620, 645, 892
Tru1I TTAA 6 cut(s) 23, 413, 528, 738, 774, 906
Tru9I TTAA 6 cut(s) 23, 413, 528, 738, 774, 906
TscAI CASTG 2 cut(s) 360, 718
TseFI GTSAC 3 cut(s) 491, 545, 666
TseI GCWGC 3 cut(s) 311, 392, 695
Tsp45I GTSAC 3 cut(s) 491, 545, 666
TspDTI ATGAA 2 cut(s) 696, 927
TspRI CASTG 2 cut(s) 360, 718
Tth111I GACNNNGTC 1 cut(s) 722
Vha464I CTTAAG 2 cut(s) 412, 527
VpaK11BI GGWCC 1 cut(s) 567
XapI RAATTY 2 cut(s) 150, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.