RchiOBHm_Chr6g0249131

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000102
Physical Location & Seq
Forward (+)
5008763 .. 5009288
526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22334

Sequence Viewer

Length: 381 bp
ATGAAGGATTCTGAGATGAGGTACATCATGAACATCACCATGTTGCAACAAGTACTCGTTCTGGTGGTTCTTTTTAACGTTGTTTCATCAACTTCCATCATCAAGACGCTACCAGGCTTCTCCGGTGACCTCCCCTTCAAACTCGAAACTGGGTACGTTGGAGTAGGTGACTTGGATGATGTGCAGCTATTCTATTACTTCATTGAATCTGAGGGTAGTCCTGAGTATGACCCTCTTGTGCTTTGGCTCACTGGTGGTCCTGGTTGTTCTGGGTTTTCTGCTCTTGTCTATGAAAATATAGGTACGTATTTAATTTTAACACAATATACTAATTCTCAACGCACTGTTCATTGGCTTATGAACAGTGCCGGCTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

4.27

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 118 3.6e-22 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 78
AfaI GTAC 4 cut(s) 23, 54, 155, 304
AgsI TTSAA 2 cut(s) 139, 206
AjnI CCWGG 2 cut(s) 112, 259
AluBI AGCT 2 cut(s) 187, 378
AluI AGCT 2 cut(s) 187, 378
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 28, 137, 179
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 114, 261
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 114, 261
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 114, 261
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 154, 256
BseBI CCWGG 2 cut(s) 114, 261
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 201, 213
BseNI ACTGG 2 cut(s) 154, 256
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 123, 369
BspCNI CTCAG 3 cut(s) 4, 202, 214
BspHI TCATGA 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 2 cut(s) 154, 256
BssAI RCCGGY 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 114, 261
Bst4CI ACNGT 2 cut(s) 346, 365
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 12, 210, 222
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 181
BstNI CCWGG 2 cut(s) 114, 261
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 112, 259
BstSNI TACGTA 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 3 cut(s) 249, 342, 370
Cac8I GCNNGC 1 cut(s) 370
CciI TCATGA 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 22, 53, 154, 303
CviAII CATG 2 cut(s) 28, 40
CviJI RGCY 6 cut(s) 117, 187, 247, 355, 372, 378
CviKI_1 RGCY 6 cut(s) 117, 187, 247, 355, 372, 378
CviQI GTAC 4 cut(s) 22, 53, 154, 303
DdeI CTNAG 3 cut(s) 12, 210, 222
Eco105I TACGTA 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 112, 259
FaeI CATG 2 cut(s) 31, 43
FaiI YATR 7 cut(s) 29, 41, 228, 291, 299, 327, 359
FatI CATG 2 cut(s) 27, 39
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HapII CCGG 2 cut(s) 123, 369
HgaI GACGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 31, 43
HinfI GANTC 2 cut(s) 8, 206
HpaII CCGG 2 cut(s) 123, 369
HphI GGTGA 3 cut(s) 28, 137, 179
Hpy188I TCNGA 2 cut(s) 13, 211
Hpy188III TCNNGA 3 cut(s) 28, 103, 221
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 346, 365
HpyCH4IV ACGT 3 cut(s) 78, 156, 305
HpyCH4V TGCA 2 cut(s) 46, 184
HpyF3I CTNAG 3 cut(s) 12, 210, 222
HpySE526I ACGT 3 cut(s) 78, 156, 305
Hsp92II CATG 2 cut(s) 31, 43
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 3 cut(s) 78, 156, 305
MaeIII GTNAC 2 cut(s) 125, 167
MluCI AATT 2 cut(s) 312, 331
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 12, 140, 205, 243
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 3 cut(s) 75, 311, 317
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 2 cut(s) 123, 369
MspR9I CCNGG 2 cut(s) 114, 261
MvaI CCWGG 2 cut(s) 114, 261
NaeI GCCGGC 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 2 cut(s) 31, 43
NmuCI GTSAC 2 cut(s) 125, 167
PagI TCATGA 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 8, 206
PkrI GCNGC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 112, 259
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 112, 259
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 4 cut(s) 23, 54, 155, 304
RsaNI GTAC 4 cut(s) 22, 53, 154, 303
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 3 cut(s) 75, 311, 317
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 114, 261
SetI ASST 9 cut(s) 23, 81, 132, 159, 169, 189, 304, 308, 380
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 2 cut(s) 312, 331
StyD4I CCNGG 2 cut(s) 112, 259
TaaI ACNGT 2 cut(s) 346, 365
TaiI ACGT 3 cut(s) 81, 159, 308
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 312, 331
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 2 cut(s) 8, 206
Tru1I TTAA 3 cut(s) 75, 311, 317
Tru9I TTAA 3 cut(s) 75, 311, 317
TscAI CASTG 3 cut(s) 256, 349, 370
TseFI GTSAC 2 cut(s) 125, 167
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 125, 167
TspDTI ATGAA 7 cut(s) 17, 44, 75, 190, 306, 338, 374
TspRI CASTG 3 cut(s) 256, 349, 370
VpaK11BI GGWCC 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.