Rh5BG296800

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000102
Physical Location & Seq
Forward (+)
37965040 .. 37985234
20195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG296800.1

Sequence Viewer

Length: 411 bp
ATGGAACACTATGAAAAGTTGTCAAACAAGGCCCGGACAAAGCCCAGAAGCCCCTCTCGATCTTCTTCTCAAGAGGAAGACCTTGGCGAGCGACTGGATGCCAAGCTCCAGGCTGCTAAGAAGAAAAGGATGTTAGAATCTAAGAACTCATTCAAAGTATTATCTGATTGGTTATGGGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCGTATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATCTTGACGTGCAAGGAAAGCAACAAAGGGACACCAATATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

7.73

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 57 - 123 9.3e-09 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 2 cut(s) 250, 338
AgsI TTSAA 2 cut(s) 154, 353
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 113, 281
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 100, 268
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 173
BglII AGATCT 1 cut(s) 364
BisI GCNGC 2 cut(s) 114, 282
BlsI GCNGC 2 cut(s) 115, 283
Bme1390I CCNGG 2 cut(s) 34, 110
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 34, 110
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 99, 197
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 103, 135
BseNI ACTGG 2 cut(s) 99, 197
BseXI GCAGC 2 cut(s) 100, 268
BshFI GGCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 317, 407
BsmFI GGGAC 2 cut(s) 317, 407
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 59, 364
BspANI GGCC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 354
BsrI ACTGG 2 cut(s) 99, 197
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 59, 364
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 117, 141
BstF5I GGATG 2 cut(s) 103, 135
BstKTI GATC 2 cut(s) 62, 367
BstMBI GATC 2 cut(s) 59, 364
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 32, 108
BstV1I GCAGC 2 cut(s) 100, 268
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 32
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 103, 135
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 31
CviJI RGCY 6 cut(s) 32, 43, 51, 106, 113, 281
CviKI_1 RGCY 6 cut(s) 32, 43, 51, 106, 113, 281
DdeI CTNAG 2 cut(s) 117, 141
DpnI GATC 2 cut(s) 61, 366
DpnII GATC 2 cut(s) 59, 364
DraIII CACNNNGTG 2 cut(s) 250, 338
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 5 cut(s) 12, 175, 240, 276, 309
FaqI GGGAC 2 cut(s) 317, 407
Fnu4HI GCNGC 2 cut(s) 114, 282
FokI GGATG 2 cut(s) 110, 142
Fsp4HI GCNGC 2 cut(s) 114, 282
GluI GCNGC 2 cut(s) 114, 282
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 34
HinfI GANTC 3 cut(s) 137, 206, 231
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 166, 205, 265
Hpy188III TCNNGA 3 cut(s) 57, 71, 368
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 297, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 117, 141
HpySE526I ACGT 1 cut(s) 372
Kzo9I GATC 2 cut(s) 59, 364
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 47, 58, 80, 95, 122, 210
Lsp1109I GCAGC 2 cut(s) 100, 268
LweI GCATC 1 cut(s) 88
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 252, 340
MalI GATC 2 cut(s) 61, 366
MboI GATC 2 cut(s) 59, 364
MboII GAAGA 5 cut(s) 54, 57, 89, 133, 341
MflI RGATCY 1 cut(s) 364
MluCI AATT 2 cut(s) 292, 357
MnlI CCTC 3 cut(s) 64, 67, 271
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 2 cut(s) 324, 360
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 34, 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 34
NdeII GATC 2 cut(s) 59, 364
NmuCI GTSAC 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 137, 206, 231
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 115, 283
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 324, 360
SatI GCNGC 2 cut(s) 114, 282
Sau3AI GATC 2 cut(s) 59, 364
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 34, 110
SetI ASST 3 cut(s) 84, 108, 375
SfaNI GCATC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 292, 357
SspI AATATT 1 cut(s) 403
StyD4I CCNGG 2 cut(s) 32, 108
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 58
TasI AATT 2 cut(s) 292, 357
TfiI GAWTC 3 cut(s) 137, 206, 231
Tru1I TTAA 2 cut(s) 324, 360
Tru9I TTAA 2 cut(s) 324, 360
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 2 cut(s) 113, 281
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 27, 282
TspRI CASTG 1 cut(s) 304
Tth111I GACNNNGTC 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.