Rh6BG009400

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000102
Physical Location & Seq
Forward (+)
1502464 .. 1504427
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG009400.1

Sequence Viewer

Length: 879 bp
ATGAGTGACACATTATCAGCTGCAGAGACTTATGAATTTCTCAGAAAGTGGTTTATGGATCACCCCAAGTTCCTCAAAAATGCACTCTATGTTGCCGGAGATTCTTATTCGGGCATTGTTCTTCCTATTATTGTTCAGGAAATATCTGATGGTAATGAAGATGGACGTCACCCACCAATGAATATCCAAGGATATGTGCTTGGTAATCCAGGAACAGACATAGATGTCGATGAGAATTACAGAGTGCCATTTGCTTTCAGAAAAGCGCTTATTTCAGATGAACTATACAAGTCACTCAAAACAAATTGTAAGGGTGAGTATGTCAATGTGGATCCAAACAATGCGTTATGTGTGGATGATCTTGACCAATACAATGAGTGTATCGCAGACATCAATACAGCCCAAATATTGGAACCTTATTGTACTGTTTCTTCTCCAAATCCACTAGGTTCAGAGCGGGATTCAGACAATCTCAATCAAGACTCTGTAAATCTTCTTTCTCTTCCTCAACTTTCCAGGCCATGGTGTCGAAGTTACATTTATCGTTTCTCTTATATTTGGGCAAATGATAAAACTGTTCAAGATGCTCTTCATGTTCGGAAGGGAAGCATCAAGGACTGGCAGAGATGCAATAAGAGCTTATCAGCTTCATATATATCTGATGTTTCTTCGAGTCTGGTTTATCATCAGAACCTCATAAAAAAAGGCTATCGAGTTCTGATATACAGTGGTGATCATGACATGGTGATTCCATATTTGGGTACTATTGCTTGGATAGAATCTCTAAACTTGACAGTTGACAGTCGTTGGAAACCATGGTTCGTAAATGGACAAATCGCAGGATACAGAGTGCTGTTACATATGAAAAGTACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

292

Amino Acids

33.25

Weight (kDa)

5.38

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 282 5.6e-66 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 1 cut(s) 169
AccB7I CCANNNNNTGG 2 cut(s) 409, 522
AccBSI CCGCTC 1 cut(s) 457
AciI CCGC 1 cut(s) 457
AclWI GGATC 3 cut(s) 66, 326, 339
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 3 cut(s) 424, 763, 871
AfeI AGCGCT 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 409, 522, 758
AgsI TTSAA 1 cut(s) 581
AjnI CCWGG 2 cut(s) 208, 515
AluBI AGCT 3 cut(s) 20, 639, 647
AluI AGCT 3 cut(s) 20, 639, 647
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 3 cut(s) 66, 326, 339
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 5 cut(s) 53, 161, 326, 743, 757
BamHI GGATCC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 143, 155
BciT130I CCWGG 2 cut(s) 210, 517
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 836
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 210, 517
BmiI GGNNCC 2 cut(s) 333, 414
BmrFI CCNGG 2 cut(s) 210, 517
BmsI GCATC 3 cut(s) 574, 617, 618
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 187, 521, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 522, 758
Bse1I ACTGG 2 cut(s) 623, 873
BseBI CCWGG 2 cut(s) 210, 517
BseDI CCNNGG 3 cut(s) 187, 521, 815
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 409, 522, 758
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 623, 873
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 409, 522, 758
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 520
Bsp143I GATC 4 cut(s) 58, 331, 358, 733
Bsp19I CCATGG 2 cut(s) 521, 815
BspACI CCGC 1 cut(s) 457
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 333, 414
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 3 cut(s) 66, 326, 339
BspQI GCTCTTC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 457
BsrI ACTGG 2 cut(s) 623, 873
BssECI CCNNGG 3 cut(s) 187, 521, 815
BssMI GATC 4 cut(s) 58, 331, 358, 733
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 3 cut(s) 187, 521, 815
Bst2UI CCWGG 2 cut(s) 210, 517
Bst4CI ACNGT 5 cut(s) 427, 577, 728, 796, 803
Bst6I CTCTTC 2 cut(s) 507, 594
BstACI GRCGYC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 2 cut(s) 521, 815
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 4 cut(s) 61, 334, 361, 736
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 4 cut(s) 58, 331, 358, 733
BstMWI GCNNNNNNNGC 1 cut(s) 636
BstNI CCWGG 2 cut(s) 210, 517
BstSCI CCNGG 2 cut(s) 208, 515
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 1 cut(s) 520
BtgI CCRYGG 2 cut(s) 521, 815
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 733
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 423, 762, 870
CviAII CATG 5 cut(s) 522, 593, 737, 742, 816
CviJI RGCY 6 cut(s) 20, 401, 520, 639, 647, 708
CviKI_1 RGCY 6 cut(s) 20, 401, 520, 639, 647, 708
CviQI GTAC 3 cut(s) 423, 762, 870
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 60, 333, 360, 735
DpnII GATC 4 cut(s) 58, 331, 358, 733
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 507, 594
EarI CTCTTC 2 cut(s) 507, 594
Eco130I CCWWGG 3 cut(s) 187, 521, 815
Eco47III AGCGCT 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 208, 515
EcoT14I CCWWGG 3 cut(s) 187, 521, 815
ErhI CCWWGG 3 cut(s) 187, 521, 815
FaeI CATG 5 cut(s) 525, 596, 740, 745, 819
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FatI CATG 5 cut(s) 521, 592, 736, 741, 815
FauI CCCGC 1 cut(s) 450
FauNDI CATATG 1 cut(s) 861
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 520
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 5 cut(s) 525, 596, 740, 745, 819
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 6 cut(s) 101, 461, 482, 673, 748, 779
HpaII CCGG 1 cut(s) 96
HphI GGTGA 5 cut(s) 53, 161, 326, 743, 757
Hpy166II GTNNAC 1 cut(s) 799
Hpy188III TCNNGA 5 cut(s) 137, 362, 479, 581, 737
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 5 cut(s) 427, 577, 728, 796, 803
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 23, 83, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 636
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 5 cut(s) 525, 596, 740, 745, 819
HspAI GCGC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 4 cut(s) 58, 331, 358, 733
LguI GCTCTTC 1 cut(s) 594
LpnPI CCDG 9 cut(s) 109, 122, 195, 222, 502, 529, 604, 662, 825
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 3 cut(s) 574, 617, 618
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 5 cut(s) 5, 167, 291, 533, 855
MalI GATC 4 cut(s) 60, 333, 360, 735
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 58, 331, 358, 733
MboII GAAGA 7 cut(s) 113, 170, 423, 485, 494, 581, 660
MflI RGATCY 1 cut(s) 331
MluCI AATT 3 cut(s) 35, 235, 304
MlyI GAGTC 2 cut(s) 476, 682
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 3 cut(s) 83, 516, 704
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 210, 517
MvaI CCWGG 2 cut(s) 210, 517
MwoI GCNNNNNNNGC 1 cut(s) 636
NcoI CCATGG 2 cut(s) 521, 815
NdeI CATATG 1 cut(s) 861
NdeII GATC 4 cut(s) 58, 331, 358, 733
NlaIII CATG 5 cut(s) 525, 596, 740, 745, 819
NlaIV GGNNCC 2 cut(s) 333, 414
NmuCI GTSAC 3 cut(s) 5, 167, 291
PagI TCATGA 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 594
PfeI GAWTC 4 cut(s) 101, 461, 748, 779
PflMI CCANNNNNTGG 2 cut(s) 409, 522
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 476, 681
PpsI GAGTC 2 cut(s) 476, 681
Psp6I CCWGG 2 cut(s) 208, 515
PspGI CCWGG 2 cut(s) 208, 515
PspN4I GGNNCC 2 cut(s) 333, 414
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 424, 763, 871
RsaNI GTAC 3 cut(s) 423, 762, 870
SapI GCTCTTC 1 cut(s) 594
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 58, 331, 358, 733
SchI GAGTC 2 cut(s) 476, 682
ScrFI CCNGG 2 cut(s) 210, 517
SetI ASST 7 cut(s) 22, 169, 418, 451, 641, 649, 696
SfaNI GCATC 3 cut(s) 574, 617, 618
SfcI CTRYAG 1 cut(s) 21
Sse9I AATT 3 cut(s) 35, 235, 304
SsiI CCGC 1 cut(s) 457
SspI AATATT 1 cut(s) 408
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 208, 515
StyI CCWWGG 3 cut(s) 187, 521, 815
TaaI ACNGT 5 cut(s) 427, 577, 728, 796, 803
TaiI ACGT 1 cut(s) 169
TaqI TCGA 4 cut(s) 228, 529, 671, 712
TasI AATT 3 cut(s) 35, 235, 304
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 4 cut(s) 101, 461, 748, 779
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 3 cut(s) 5, 167, 291
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 3 cut(s) 5, 167, 291
TspDTI ATGAA 7 cut(s) 48, 171, 194, 294, 581, 639, 878
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 2 cut(s) 409, 522
XapI RAATTY 1 cut(s) 35
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.