Rh6CG178800

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000102
Physical Location & Seq
Forward (+)
28019890 .. 28065996
46107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG178800.1

Sequence Viewer

Length: 279 bp
ATGCAACTCCAAGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTATCGTCTTCATTGCGTTTGTCTACTTCTAGAGGAAGTTAAGGGAAAGAAAGAATGGGTGTTCCTGGGTTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

5.23

Isoelectric Point (pI)

12.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 67 3.4e-10 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AdeI CACNNNGTG 2 cut(s) 85, 173
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 8
BfaI CTAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 8
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BsaJI CCNNGG 2 cut(s) 10, 265
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 10, 265
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 10, 265
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 200
BsuI GTATCC 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
CviJI RGCY 1 cut(s) 116
CviKI_1 RGCY 1 cut(s) 116
DraIII CACNNNGTG 2 cut(s) 85, 173
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaiI YATR 5 cut(s) 73, 75, 111, 144, 277
FaqI GGGAC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 117
HinfI GANTC 2 cut(s) 41, 66
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 79, 224
Hpy188I TCNGA 2 cut(s) 40, 100
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 79, 224
HpyCH4V TGCA 2 cut(s) 4, 132
LguI GCTCTTC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 45, 251
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 87, 175
MboII GAAGA 2 cut(s) 176, 200
MluCI AATT 2 cut(s) 127, 192
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 2 cut(s) 106, 226
MseI TTAA 3 cut(s) 159, 195, 240
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 41, 66
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PsyI GACNNNGTC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 159, 195, 240
SatI GCNGC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 266
SgeI CNNG 6 cut(s) 23, 31, 35, 44, 95, 242
Sse9I AATT 2 cut(s) 127, 192
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 10
TasI AATT 2 cut(s) 127, 192
TfiI GAWTC 2 cut(s) 41, 66
Tru1I TTAA 3 cut(s) 159, 195, 240
Tru9I TTAA 3 cut(s) 159, 195, 240
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 117, 200
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 143
XbaI TCTAGA 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.