Rh6DG040100

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000102
Physical Location & Seq
Forward (+)
4321835 .. 4326137
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG040100.1

Sequence Viewer

Length: 741 bp
ATGACTGTGTTGCTACAAGCACTTCTTCTAGTCCTCCTCTTTCACATTAATGCTGCTTCCAGGTCCATCATCACCAGCTTACCCGGCTTTCCTGGTGACCTTCCATTCAGACTTGAAACTGGGTACATCGGAGTTGGAGACTCGGATAACGTGCAACTATTCTATTACTTCATTGAGTCCGAAGGATCTCCGGTGTATGATCCTCTTGTGCTTTGGCTCACCGGAGGTCCTGGTTGTTCTGGTTTTTCTGCCCTTGTATATGAAAATATTGGTCCTCTGTCATTTGACTATGCACGCTCGTTTGACAACAAGCCACAGCTGAAGTTGAACCCATACTCATGGACAAAGGTTGCCAACATAATATTTATAGATGCCCCTGTCGGGACAGGATTCTCATATGCTAAAAATTGGGACGAATATCCCAATTTGAATGACACAATATCAGCTGCACAAACATATCAGTTTCTTAGAAAGTGGCTTGTGGATCACCCCAGGTTCATCTCCAATCCACTCTACATTGCTGGAGATTCTTATGCAGGCATAGTTCTTCCGATCATCGTTCAAGAAATATCTGATGGTAATGAAGATGGACTTGAGCCAGCAATGAATCTCCAAGGATACGTCCTTGGCAACCCAGTCACAGATGAAGTACAAGATGCCAATGCCCAAGTACTCTTTGCTTACCTAAAAGCTCTTATATCATATGATCTATACCAGACTCACTCCAACAATATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

246

Amino Acids

27.24

Weight (kDa)

4.31

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 28 - 243 3.2e-74 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 193, 194, 492
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 3 cut(s) 125, 651, 672
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 4 cut(s) 116, 328, 430, 563
AjnI CCWGG 4 cut(s) 59, 91, 229, 491
AluBI AGCT 4 cut(s) 78, 319, 446, 692
AluI AGCT 4 cut(s) 78, 319, 446, 692
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 3 cut(s) 193, 194, 492
ApeKI GCWGC 2 cut(s) 53, 446
AseI ATTAAT 1 cut(s) 48
AspS9I GGNCC 3 cut(s) 63, 227, 272
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 64, 107, 211, 479
AvaII GGWCC 3 cut(s) 63, 227, 272
BbvI GCAGC 2 cut(s) 40, 433
BccI CCATC 3 cut(s) 74, 569, 581
BciT130I CCWGG 4 cut(s) 61, 93, 231, 493
BciVI GTATCC 1 cut(s) 611
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 2 cut(s) 54, 447
BlsI GCNGC 2 cut(s) 55, 448
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 5 cut(s) 61, 84, 93, 231, 493
Bme18I GGWCC 3 cut(s) 63, 227, 272
BmgT120I GGNCC 3 cut(s) 63, 227, 272
BmrFI CCNGG 5 cut(s) 61, 84, 93, 231, 493
BmrI ACTGGG 2 cut(s) 129, 629
BmsI GCATC 2 cut(s) 361, 646
BmuI ACTGGG 2 cut(s) 129, 629
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 491, 613, 625
BsaWI WCCGGW 2 cut(s) 190, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 124, 635
Bse3DI GCAATG 2 cut(s) 516, 609
BseBI CCWGG 4 cut(s) 61, 93, 231, 493
BseDI CCNNGG 3 cut(s) 491, 613, 625
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 2 cut(s) 516, 609
BseNI ACTGG 2 cut(s) 124, 635
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 40, 433
BsgI GTGCAG 1 cut(s) 432
BsiSI CCGG 3 cut(s) 84, 191, 222
BslFI GGGAC 2 cut(s) 397, 425
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 397, 425
Bsp143I GATC 5 cut(s) 185, 199, 484, 552, 706
BspPI GGATC 3 cut(s) 193, 194, 492
BsrDI GCAATG 2 cut(s) 516, 609
BsrI ACTGG 2 cut(s) 124, 635
BssECI CCNNGG 3 cut(s) 491, 613, 625
BssMI GATC 5 cut(s) 185, 199, 484, 552, 706
BssT1I CCWWGG 2 cut(s) 613, 625
Bst2UI CCWGG 4 cut(s) 61, 93, 231, 493
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 295, 538, 600
BstDEI CTNAG 1 cut(s) 467
BstEII GGTNACC 1 cut(s) 95
BstKTI GATC 5 cut(s) 188, 202, 487, 555, 709
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 5 cut(s) 185, 199, 484, 552, 706
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 4 cut(s) 61, 93, 231, 493
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 5 cut(s) 59, 82, 91, 229, 491
BstV1I GCAGC 2 cut(s) 40, 433
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 185
BsuI GTATCC 1 cut(s) 611
Cac8I GCNNGC 3 cut(s) 295, 538, 600
Cfr13I GGNCC 3 cut(s) 63, 227, 272
Csp6I GTAC 3 cut(s) 124, 650, 671
CviAII CATG 1 cut(s) 339
CviJI RGCY 9 cut(s) 78, 87, 217, 313, 319, 446, 478, 598, 692
CviKI_1 RGCY 9 cut(s) 78, 87, 217, 313, 319, 446, 478, 598, 692
CviQI GTAC 3 cut(s) 124, 650, 671
DdeI CTNAG 1 cut(s) 467
DpnI GATC 5 cut(s) 187, 201, 486, 554, 708
DpnII GATC 5 cut(s) 185, 199, 484, 552, 706
Eco130I CCWWGG 2 cut(s) 613, 625
Eco47I GGWCC 3 cut(s) 63, 227, 272
Eco57I CTGAAG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 95
EcoRII CCWGG 4 cut(s) 59, 91, 229, 491
EcoT14I CCWWGG 2 cut(s) 613, 625
ErhI CCWWGG 2 cut(s) 613, 625
FaeI CATG 1 cut(s) 342
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 576, 608
FaqI GGGAC 2 cut(s) 397, 425
FatI CATG 1 cut(s) 338
FauNDI CATATG 2 cut(s) 397, 703
Fnu4HI GCNGC 2 cut(s) 54, 447
Fsp4HI GCNGC 2 cut(s) 54, 447
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 54, 447
GsuI CTGGAG 1 cut(s) 543
HapII CCGG 3 cut(s) 84, 191, 222
Hin1II CATG 1 cut(s) 342
HinfI GANTC 6 cut(s) 140, 176, 390, 527, 607, 718
HpaII CCGG 3 cut(s) 84, 191, 222
HphI GGTGA 4 cut(s) 64, 107, 211, 479
Hpy188I TCNGA 6 cut(s) 110, 131, 145, 181, 552, 574
Hpy188III TCNNGA 2 cut(s) 382, 563
HpyAV CCTTC 2 cut(s) 110, 176
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 150, 621
HpyCH4V TGCA 4 cut(s) 154, 293, 449, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 2 cut(s) 150, 621
Hsp92II CATG 1 cut(s) 342
Kzo9I GATC 5 cut(s) 185, 199, 484, 552, 706
Lsp1109I GCAGC 2 cut(s) 40, 433
LweI GCATC 2 cut(s) 361, 646
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 150, 621
MaeIII GTNAC 2 cut(s) 95, 637
MalI GATC 5 cut(s) 187, 201, 486, 554, 708
MboI GATC 5 cut(s) 185, 199, 484, 552, 706
MboII GAAGA 3 cut(s) 17, 539, 596
MflI RGATCY 1 cut(s) 185
MluCI AATT 2 cut(s) 406, 424
MlyI GAGTC 3 cut(s) 134, 185, 712
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 5 cut(s) 44, 47, 213, 218, 285
MseI TTAA 2 cut(s) 48, 739
MslI CAYNNNNRTG 2 cut(s) 48, 337
MspA1I CMGCKG 2 cut(s) 319, 446
MspI CCGG 3 cut(s) 84, 191, 222
MspR9I CCNGG 5 cut(s) 61, 84, 93, 231, 493
MvaI CCWGG 4 cut(s) 61, 93, 231, 493
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 84
NdeI CATATG 2 cut(s) 397, 703
NdeII GATC 5 cut(s) 185, 199, 484, 552, 706
NlaIII CATG 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 95, 637
PfeI GAWTC 3 cut(s) 390, 527, 607
PkrI GCNGC 2 cut(s) 55, 448
PleI GAGTC 3 cut(s) 134, 184, 712
PpsI GAGTC 3 cut(s) 134, 184, 712
PpuMI RGGWCCY 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 4 cut(s) 59, 91, 229, 491
PspEI GGTNACC 1 cut(s) 95
PspGI CCWGG 4 cut(s) 59, 91, 229, 491
PspPI GGNCC 3 cut(s) 63, 227, 272
PspPPI RGGWCCY 1 cut(s) 227
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 2 cut(s) 319, 446
RsaI GTAC 3 cut(s) 125, 651, 672
RsaNI GTAC 3 cut(s) 124, 650, 671
RseI CAYNNNNRTG 2 cut(s) 48, 337
SaqAI TTAA 2 cut(s) 48, 739
SatI GCNGC 2 cut(s) 54, 447
Sau3AI GATC 5 cut(s) 185, 199, 484, 552, 706
Sau96I GGNCC 3 cut(s) 63, 227, 272
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 3 cut(s) 134, 185, 712
ScrFI CCNGG 5 cut(s) 61, 84, 93, 231, 493
SfaNI GCATC 2 cut(s) 361, 646
SinI GGWCC 3 cut(s) 63, 227, 272
SmiMI CAYNNNNRTG 2 cut(s) 48, 337
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 2 cut(s) 406, 424
SspI AATATT 3 cut(s) 268, 363, 733
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 5 cut(s) 59, 82, 91, 229, 491
StyI CCWWGG 2 cut(s) 613, 625
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 153, 624
TasI AATT 2 cut(s) 406, 424
TatI WGTACW 2 cut(s) 649, 670
TfiI GAWTC 3 cut(s) 390, 527, 607
Tru1I TTAA 2 cut(s) 48, 739
Tru9I TTAA 2 cut(s) 48, 739
TseFI GTSAC 2 cut(s) 95, 637
TseI GCWGC 2 cut(s) 53, 446
Tsp45I GTSAC 2 cut(s) 95, 637
TspDTI ATGAA 6 cut(s) 160, 276, 487, 597, 620, 660
VpaK11BI GGWCC 3 cut(s) 63, 227, 272
VspI ATTAAT 1 cut(s) 48
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.