Rmu_co7960301.1_g000001

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7960301.1
OG0000102
Physical Location & Seq
Reverse (-)
1 .. 465
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7960301.1_g000001.1.cds

Sequence Viewer

Length: 215 bp
atgtctgttccacacatcggcacccaggagtggatccgtgatcttaatttgacaaatagtgagatttggcggccgtggtatgtagatggtcaagttgctggatactcagaaaagttctcaaacgttgactacaatctgcaatatgctactgtaaagggtgcgggtcatgccgctccagagtacaaagctaaggaatgttacgcgatgattgatcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

72

Amino Acids

8.28

Weight (kDa)

5.51

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 1 cut(s) 203
AciI CCGC 3 cut(s) 70, 161, 171
AclI AACGTT 1 cut(s) 123
AclWI GGATC 2 cut(s) 28, 41
AcoI YGGCCR 1 cut(s) 71
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 17, 30
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
AlwI GGATC 2 cut(s) 28, 41
AoxI GGCC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 20
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 95
BisI GCNGC 2 cut(s) 71, 171
BlsI GCNGC 2 cut(s) 72, 172
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 22, 35
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 24, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 30
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 24, 74
BseLI CCNNNNNNNGG 2 cut(s) 17, 30
BseMII CTCAG 1 cut(s) 120
BseX3I CGGCCG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 17, 30
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 3 cut(s) 33, 40, 211
BspACI CCGC 3 cut(s) 70, 161, 171
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 119
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 22, 35
BspPI GGATC 2 cut(s) 28, 41
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 24, 74
BssMI GATC 3 cut(s) 33, 40, 211
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 106, 189
BstDSI CCRYGG 1 cut(s) 74
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 3 cut(s) 36, 43, 214
BstMBI GATC 3 cut(s) 33, 40, 211
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 71
BsuI GTATCC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 74
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 167
CviJI RGCY 2 cut(s) 73, 188
CviKI_1 RGCY 2 cut(s) 73, 188
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 106, 189
DpnI GATC 3 cut(s) 35, 42, 213
DpnII GATC 3 cut(s) 33, 40, 211
EaeI YGGCCR 1 cut(s) 71
EagI CGGCCG 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 81, 144, 168
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 71, 171
Fsp4HI GCNGC 2 cut(s) 71, 171
GluI GCNGC 2 cut(s) 71, 171
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 106, 189
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 3 cut(s) 33, 40, 211
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 11, 38, 84, 189
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 197
MalI GATC 3 cut(s) 35, 42, 213
MbiI CCGCTC 1 cut(s) 173
MboI GATC 3 cut(s) 33, 40, 211
MflI RGATCY 1 cut(s) 33
MluCI AATT 1 cut(s) 46
MseI TTAA 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 3 cut(s) 33, 40, 211
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 22, 35
PkrI GCNGC 2 cut(s) 72, 172
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 22, 35
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 71, 171
Sau3AI GATC 3 cut(s) 33, 40, 211
ScrFI CCNGG 1 cut(s) 26
SetI ASST 2 cut(s) 126, 190
SgeI CNNG 9 cut(s) 37, 38, 50, 87, 104, 111, 174, 179, 188
Sse9I AATT 1 cut(s) 46
SsiI CCGC 3 cut(s) 70, 161, 171
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 126
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 180
TauI GCSGC 2 cut(s) 73, 173
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.