Prupe.8G129900_v2.0.a1

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000102
Physical Location & Seq
Forward (+)
15301876 .. 15304698
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G129900.1

Sequence Viewer

Length: 726 bp
ATGATGGTATTGCAGTGGATTAAAGGTCACCCTCAATTTCTGAAAAATCCACTATACATTGGTGGTGATTCATATTCAGGCAAGACCGTTCCCATCATTACTCAAGAGGTGTCCGAAGGAAATGAGGTTGGGCGTGAACCACCAATGAATCTCAAAGGTTACATATTAGGCAACCCATTTACAGATCCAACATATGACGTGAATTCACGAATTAAATTTGCTCACAATATGGCCCTTATATCTGATGCACTCTATGAGTCAACTAAAACAAATTGCAAGGGGGAGTATGTTCAAGTAGATCCAAGCAATGCACCTTGTGTGGAAAACCTTCAAGAAGTTACTCAGTGCCTCCAAAAGATAAATAGTCCCCAAATATTGGAGCCAATATGTAGCACAATGTCTCCAAAACCAAAAGGATTCAAATGGGATAAAAATTTTGTTGGAGAGAACTTCTTAGATATGCCTCATCGCTATCCAGAACCATGGTGTCGTGCTTATAACTATCTGTTCTCCTTCATTTGGGCTAATGATAAAACTGTACAAAATGCTCTTCACGTTCGAGAGGGAACAATAAGGGATTGGGAAAGATGCAATCAGAGCTTCTCTAGCAGTTATGCACATGATGTTAGAACTAGTCTTGACTATCATCGAAACCTCACCAAGAAAAACCTTAGAGCCACTACTACAAAAAGTGAAAAAGACGACCAGAAAACAACGACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

242

Amino Acids

27.67

Weight (kDa)

7.61

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 376
AclWI GGATC 2 cut(s) 179, 293
AcsI RAATTY 3 cut(s) 202, 215, 433
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 376, 519
AgsI TTSAA 3 cut(s) 293, 332, 421
AhlI ACTAGT 1 cut(s) 632
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 1 cut(s) 600
AluI AGCT 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 2 cut(s) 179, 293
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 3 cut(s) 202, 215, 433
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 20, 77, 649
BccI CCATC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 606, 633
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 2 cut(s) 235, 578
BpuEI CTTGAG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 519
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 376, 519
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 356
BshFI GGCC 1 cut(s) 233
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 376, 519
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 538
Bsp143I GATC 2 cut(s) 184, 298
Bsp19I CCATGG 1 cut(s) 482
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 2 cut(s) 179, 293
BspQI GCTCTTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 2 cut(s) 184, 298
BssT1I CCWWGG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 88, 538, 721
Bst6I CTCTTC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 342, 454, 671
BstDSI CCRYGG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 26
BstKTI GATC 2 cut(s) 187, 301
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 184, 298
BstMWI GCNNNNNNNGC 2 cut(s) 597, 606
BstPI GGTNACC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 184, 298
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 2 cut(s) 184, 298
BsuRI GGCC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 452
BtrI CACGTC 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 350
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 539
CviAII CATG 2 cut(s) 483, 620
CviJI RGCY 5 cut(s) 233, 382, 524, 600, 677
CviKI_1 RGCY 5 cut(s) 233, 382, 524, 600, 677
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 3 cut(s) 342, 454, 671
DpnI GATC 2 cut(s) 186, 300
DpnII GATC 2 cut(s) 184, 298
DraIII CACNNNGTG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 482
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 486, 623
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 482, 619
FauNDI CATATG 1 cut(s) 193
FspBI CTAG 2 cut(s) 606, 633
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 2 cut(s) 486, 623
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 4 cut(s) 68, 148, 257, 417
HphI GGTGA 3 cut(s) 20, 77, 649
Hpy166II GTNNAC 2 cut(s) 137, 261
Hpy188I TCNGA 4 cut(s) 42, 115, 244, 597
Hpy188III TCNNGA 6 cut(s) 104, 207, 332, 476, 560, 638
Hpy8I GTNNAC 2 cut(s) 137, 261
Hpy99I CGWCG 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 110, 338, 523
HpyCH4III ACNGT 3 cut(s) 88, 538, 721
HpyCH4IV ACGT 2 cut(s) 198, 555
HpyCH4V TGCA 6 cut(s) 13, 248, 276, 311, 591, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 597, 606
HpyF3I CTNAG 3 cut(s) 342, 454, 671
HpySE526I ACGT 2 cut(s) 198, 555
Hsp92II CATG 2 cut(s) 486, 623
Kzo9I GATC 2 cut(s) 184, 298
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 3 cut(s) 63, 489, 719
LweI GCATC 2 cut(s) 235, 578
MaeI CTAG 2 cut(s) 606, 633
MaeII ACGT 2 cut(s) 198, 555
MaeIII GTNAC 3 cut(s) 26, 158, 337
MalI GATC 2 cut(s) 186, 300
MboI GATC 2 cut(s) 184, 298
MboII GAAGA 1 cut(s) 542
MflI RGATCY 2 cut(s) 184, 298
MluCI AATT 6 cut(s) 35, 202, 210, 215, 271, 433
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 212, 421
MnlI CCTC 7 cut(s) 42, 100, 118, 359, 474, 556, 665
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 21, 213
MwoI GCNNNNNNNGC 2 cut(s) 597, 606
NcoI CCATGG 1 cut(s) 482
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 184, 298
NlaIII CATG 2 cut(s) 486, 623
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 68, 148, 417
PflMI CCANNNNNTGG 1 cut(s) 376
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PsiI TTATAA 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 2 cut(s) 184, 298
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 21, 213
Sau3AI GATC 2 cut(s) 184, 298
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 266
SfaNI GCATC 2 cut(s) 235, 578
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 6 cut(s) 35, 202, 210, 215, 271, 433
SspI AATATT 1 cut(s) 375
SspMI CTAG 2 cut(s) 606, 633
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 3 cut(s) 88, 538, 721
TaiI ACGT 2 cut(s) 201, 558
TaqI TCGA 2 cut(s) 559, 649
TasI AATT 6 cut(s) 35, 202, 210, 215, 271, 433
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 3 cut(s) 68, 148, 417
Tru1I TTAA 2 cut(s) 21, 213
Tru9I TTAA 2 cut(s) 21, 213
TscAI CASTG 2 cut(s) 20, 350
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 60, 161, 505
TspRI CASTG 2 cut(s) 20, 350
Van91I CCANNNNNTGG 1 cut(s) 376
XapI RAATTY 3 cut(s) 202, 215, 433
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 606, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.