RchiOBHm_Chr6g0249041

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000102
Physical Location & Seq
Forward (+)
4896909 .. 4897894
986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22325

Sequence Viewer

Length: 492 bp
ATGAAGCATTATTCTAAACCTAGAAAGCACTCTGAACTAATTTTGCCAAACGGTTTGGCCTTTCTAGCTACAAGCGTACCAAAAAAGTCGGGAGCTTATAATTATTTTTCTTCATTTACTTGGGCAAATGATAAAACTGTTCAATCTGCTCTTCATGTAGAAAAGGGAAGCATCAAGGAATGGGTTAGATGCAATTGGAGCTTAAGTGATTCATATGTGAAAGATGTTTCTTCTAGTGTTGGTTATCATCAGAACCTCGCAAGAAAAGGCTATAGAGTTCTGATATACAGTGGTGATCATGATATGGCTATTCCATATGTGGGTACTATTGCTTGGATAGAATCTCTGAACTTGACTCTCGACAGTCAATGGAAACCTTGGTTCGTCAATGCACAAGTTGCGGGGTTGGGTGCCGGTCACACAGCTCCAGAGTACAAACCCAAAGAATGTTTTGTTATGATCAGTAGATGGTTCGCATACTACCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

163

Amino Acids

18.54

Weight (kDa)

9.26

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 31 - 158 7.6e-28 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 410
AciI CCGC 1 cut(s) 401
AfaI GTAC 3 cut(s) 78, 325, 434
AfiI CCNNNNNNNGG 1 cut(s) 320
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 4 cut(s) 68, 95, 201, 425
AluI AGCT 4 cut(s) 68, 95, 201, 425
AoxI GGCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BanI GGYRCC 1 cut(s) 410
BccI CCATC 1 cut(s) 462
BclI TGATCA 2 cut(s) 295, 459
BfaI CTAG 3 cut(s) 21, 65, 234
BfmI CTRYAG 2 cut(s) 271, 488
BfrI CTTAAG 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 412
BmsI GCATC 2 cut(s) 179, 180
BpmI CTGGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse118I RCCGGY 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 377
BseLI CCNNNNNNNGG 1 cut(s) 320
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 295, 459
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 59
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 412
BspQI GCTCTTC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 410
BspTI CTTAAG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 2 cut(s) 295, 459
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 53, 139, 290, 365
Bst6I CTCTTC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 398
BstKTI GATC 2 cut(s) 298, 462
BstMBI GATC 2 cut(s) 295, 459
BstMWI GCNNNNNNNGC 3 cut(s) 65, 198, 398
BstSFI CTRYAG 2 cut(s) 271, 488
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 295
CciI TCATGA 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 413
Csp6I GTAC 3 cut(s) 77, 324, 433
CviAII CATG 2 cut(s) 155, 299
CviJI RGCY 7 cut(s) 59, 68, 95, 201, 270, 308, 425
CviKI_1 RGCY 7 cut(s) 59, 68, 95, 201, 270, 308, 425
CviQI GTAC 3 cut(s) 77, 324, 433
DpnI GATC 2 cut(s) 297, 461
DpnII GATC 2 cut(s) 295, 459
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 2 cut(s) 158, 302
FatI CATG 2 cut(s) 154, 298
FauI CCCGC 1 cut(s) 394
FauNDI CATATG 2 cut(s) 214, 316
FbaI TGATCA 2 cut(s) 295, 459
FspBI CTAG 3 cut(s) 21, 65, 234
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 414
Hin1II CATG 2 cut(s) 158, 302
HinfI GANTC 3 cut(s) 209, 341, 355
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 34, 252, 282, 348
Hpy188III TCNNGA 4 cut(s) 90, 299, 359, 428
HpyCH4III ACNGT 4 cut(s) 53, 139, 290, 365
HpyCH4V TGCA 2 cut(s) 192, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 198, 398
Hsp92II CATG 2 cut(s) 158, 302
Ksp22I TGATCA 2 cut(s) 295, 459
Kzo9I GATC 2 cut(s) 295, 459
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 3 cut(s) 92, 198, 430
LpnPI CCDG 2 cut(s) 427, 441
LweI GCATC 2 cut(s) 179, 180
MaeI CTAG 3 cut(s) 21, 65, 234
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 297, 461
MboI GATC 2 cut(s) 295, 459
MboII GAAGA 3 cut(s) 102, 143, 222
MfeI CAATTG 1 cut(s) 193
MluCI AATT 3 cut(s) 39, 100, 193
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 1 cut(s) 266
MseI TTAA 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 65, 198, 398
NdeI CATATG 2 cut(s) 214, 316
NdeII GATC 2 cut(s) 295, 459
NlaIII CATG 2 cut(s) 158, 302
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 416
PagI TCATGA 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 209, 341
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 412
RsaI GTAC 3 cut(s) 78, 325, 434
RsaNI GTAC 3 cut(s) 77, 324, 433
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 203
Sau3AI GATC 2 cut(s) 295, 459
SchI GAGTC 1 cut(s) 349
SetI ASST 7 cut(s) 22, 70, 97, 203, 258, 379, 427
SfaNI GCATC 2 cut(s) 179, 180
SfcI CTRYAG 2 cut(s) 271, 488
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 39, 100, 193
SsiI CCGC 1 cut(s) 401
SspMI CTAG 3 cut(s) 21, 65, 234
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 4 cut(s) 53, 139, 290, 365
TaqI TCGA 1 cut(s) 360
TasI AATT 3 cut(s) 39, 100, 193
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 2 cut(s) 209, 341
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 4 cut(s) 17, 102, 143, 201
TspRI CASTG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 202
XspI CTAG 3 cut(s) 21, 65, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.