Rmu_sc0004832.1_g000025

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004832.1
OG0000102
Physical Location & Seq
Forward (+)
108893 .. 111461
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004832.1_g000025.1.cds

Sequence Viewer

Length: 771 bp
atgttgcaacaagtacttgttatggtggttctttttaactttgtttcatcaacttccatcatcaagacgctaccaggcttctccggtgacctccccttcaaactcgaaactgggtacgttggagtaggtgacttggatgatgtgcagctattctattacttcattgaatctgagggtagtcctgagtatgaccctcttgtgctttggctcactggtggtcctggttgttctgggttttctgcccttgtctatgaaaatataggtccactatcatttgaccctgcaaattccattggcaacaagccacagttgaagttgaacccatactcatggacaaaggtcgccaacattatattcatagatgcacctgtgggcactggttactcatatgcaaaaacttgggaaggatacagcaatatgagtgacacattatcagctgcagagacttatgaatttctcagaaagtggtttatggatcaccccaagttcctcaaaaatgcactctatgttgccggagattcttattcgggcattgttcttcctattattgttcaggaaatatctgatggtaatgaagatggacgtcacccaccaatgaatatccaaggatatgtgcttggtaatccaggaacagacatagatgtcgatgagaattacagagtgccatttgctttcagaaaagcgcttatatcagatgaactatacgaggtgcaacacgctaacacccttaaaattttgtttgtttcttctaagttgcatttagagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

4.55

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AatII GACGTC 1 cut(s) 586
AclWI GGATC 1 cut(s) 483
AcsI RAATTY 3 cut(s) 286, 452, 732
AcyI GRCGYC 1 cut(s) 583
AfaI GTAC 2 cut(s) 15, 116
AfeI AGCGCT 1 cut(s) 684
AgsI TTSAA 4 cut(s) 100, 167, 313, 319
AjnI CCWGG 3 cut(s) 73, 220, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 2 cut(s) 148, 437
AluI AGCT 2 cut(s) 148, 437
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 483
Aor51HI AGCGCT 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 145, 437
ApoI RAATTY 3 cut(s) 286, 452, 732
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 218, 263
AsuHPI GGTGA 4 cut(s) 98, 140, 470, 578
AvaII GGWCC 2 cut(s) 218, 263
BaeGI GKGCMC 1 cut(s) 377
BbvI GCAGC 2 cut(s) 157, 424
BccI CCATC 3 cut(s) 65, 560, 572
BciT130I CCWGG 3 cut(s) 75, 222, 627
BciVI GTATCC 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 686
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 2 cut(s) 146, 438
BlsI GCNGC 2 cut(s) 147, 439
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 75, 222, 627
Bme18I GGWCC 2 cut(s) 218, 263
BmgT120I GGNCC 2 cut(s) 218, 263
BmrFI CCNGG 3 cut(s) 75, 222, 627
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 120
BoxI GACNNNNGTC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 115, 217, 382
BseBI CCWGG 3 cut(s) 75, 222, 627
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 3 cut(s) 162, 174, 472
BseNI ACTGG 3 cut(s) 115, 217, 382
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 157, 424
BsgI GTGCAG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 84, 513
BsmAI GTCTC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 475
BspCNI CTCAG 3 cut(s) 163, 175, 471
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 483
BsrI ACTGG 3 cut(s) 115, 217, 382
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 1 cut(s) 475
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 3 cut(s) 75, 222, 627
Bst4CI ACNGT 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 583
BstDEI CTNAG 4 cut(s) 171, 183, 458, 750
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 1 cut(s) 475
BstNI CCWGG 3 cut(s) 75, 222, 627
BstPAI GACNNNNGTC 1 cut(s) 338
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 73, 220, 625
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 157, 424
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 210, 375
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 218, 263
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 14, 115
CviAII CATG 1 cut(s) 330
CviJI RGCY 5 cut(s) 78, 148, 208, 304, 437
CviKI_1 RGCY 5 cut(s) 78, 148, 208, 304, 437
CviQI GTAC 2 cut(s) 14, 115
DdeI CTNAG 4 cut(s) 171, 183, 458, 750
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 218, 263
Eco47III AGCGCT 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 73, 220, 625
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 1 cut(s) 333
FatI CATG 1 cut(s) 329
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 146, 438
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 146, 438
GlaI GCGC 1 cut(s) 684
GluI GCNGC 2 cut(s) 146, 438
HaeII RGCGCY 1 cut(s) 686
HapII CCGG 2 cut(s) 84, 513
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 1 cut(s) 333
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HinfI GANTC 2 cut(s) 167, 518
HpaII CCGG 2 cut(s) 84, 513
HphI GGTGA 4 cut(s) 98, 140, 470, 578
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 5 cut(s) 172, 461, 565, 677, 694
Hpy188III TCNNGA 3 cut(s) 64, 182, 554
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 106, 398
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 117, 583
HpyCH4V TGCA 9 cut(s) 7, 145, 284, 365, 392, 440, 500, 712, 757
HpyF3I CTNAG 4 cut(s) 171, 183, 458, 750
HpySE526I ACGT 2 cut(s) 117, 583
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 1 cut(s) 333
HspAI GCGC 1 cut(s) 683
Kzo9I GATC 1 cut(s) 475
Lsp1109I GCAGC 2 cut(s) 157, 424
LweI GCATC 1 cut(s) 352
MaeII ACGT 2 cut(s) 117, 583
MaeIII GTNAC 5 cut(s) 86, 128, 380, 422, 584
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 3 cut(s) 530, 587, 738
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 4 cut(s) 286, 452, 652, 732
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 5 cut(s) 101, 166, 204, 500, 700
MseI TTAA 2 cut(s) 36, 729
MslI CAYNNNNRTG 1 cut(s) 328
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 2 cut(s) 84, 513
MspR9I CCNGG 3 cut(s) 75, 222, 627
MvaI CCWGG 3 cut(s) 75, 222, 627
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 475
NlaIII CATG 1 cut(s) 333
NmuCI GTSAC 4 cut(s) 86, 128, 422, 584
PfeI GAWTC 2 cut(s) 167, 518
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 2 cut(s) 147, 439
PshAI GACNNNNGTC 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 73, 220, 625
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 3 cut(s) 73, 220, 625
PspPI GGNCC 2 cut(s) 218, 263
PstI CTGCAG 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 15, 116
RsaNI GTAC 2 cut(s) 14, 115
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 2 cut(s) 36, 729
SatI GCNGC 2 cut(s) 146, 438
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 2 cut(s) 218, 263
ScaI AGTACT 1 cut(s) 15
ScrFI CCNGG 3 cut(s) 75, 222, 627
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 218, 263
SmiMI CAYNNNNRTG 1 cut(s) 328
Sse9I AATT 4 cut(s) 286, 452, 652, 732
StyD4I CCNGG 3 cut(s) 73, 220, 625
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 2 cut(s) 120, 586
TaqI TCGA 2 cut(s) 105, 645
TasI AATT 4 cut(s) 286, 452, 652, 732
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 167, 518
Tru1I TTAA 2 cut(s) 36, 729
Tru9I TTAA 2 cut(s) 36, 729
TscAI CASTG 2 cut(s) 217, 382
TseFI GTSAC 4 cut(s) 86, 128, 422, 584
TseI GCWGC 2 cut(s) 145, 437
Tsp45I GTSAC 4 cut(s) 86, 128, 422, 584
TspDTI ATGAA 8 cut(s) 36, 151, 267, 346, 465, 588, 611, 711
TspRI CASTG 2 cut(s) 217, 382
VpaK11BI GGWCC 2 cut(s) 218, 263
XapI RAATTY 3 cut(s) 286, 452, 732
ZraI GACGTC 1 cut(s) 584
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.