Rmu_sc0002016.1_g000008

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002016.1
Physical Location & Seq
Forward (+)
27664 .. 28314
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002016.1_g000008.1.cds

Sequence Viewer

Length: 402 bp
atgcatgcacctgtgggcactggttactcatatgcaaaaacttgggaaggatacagcaatatgagtgacacattatcagctgcagagacttatgaatttctcagaaagtggtttatggaacaccccaagttcctcaaaaatgcactctatgttgccggagattcttattcgggcattgttcttcctattattgttcaggaaatatctgatggaacagacttagatgtcgatgagaattacagagttccatttgctttcagaaaagcgcttatatcagatgaactataccaggtgcaacaggctaacacccttaaaattttgattctggcttttgatttgattctggcttttgaaatggttctgcatcattttcacgactgtcaaaaattcaaaatatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.39

Weight (kDa)

5.22

Isoelectric Point (pI)

21.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AcsI RAATTY 3 cut(s) 95, 315, 386
AfeI AGCGCT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 353, 391
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 80
Aor51HI AGCGCT 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 95, 315, 386
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 101, 220
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 288
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 80, 302, 329, 347
CviKI_1 RGCY 4 cut(s) 80, 302, 329, 347
DdeI CTNAG 2 cut(s) 101, 220
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FatI CATG 1 cut(s) 4
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GlaI GCGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 269
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 3 cut(s) 161, 322, 340
HpaII CCGG 1 cut(s) 156
Hpy188I TCNGA 4 cut(s) 104, 208, 260, 277
Hpy188III TCNNGA 2 cut(s) 197, 374
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 7 cut(s) 4, 8, 35, 83, 143, 295, 364
HpyF3I CTNAG 2 cut(s) 101, 220
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 1 cut(s) 266
LpnPI CCDG 9 cut(s) 6, 24, 169, 182, 275, 284, 302, 311, 329
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 373
MabI ACCWGGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 23, 65
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 4 cut(s) 95, 235, 315, 386
MnlI CCTC 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 31
NlaIII CATG 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 3 cut(s) 161, 322, 340
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PstI CTGCAG 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 20
SetI ASST 3 cut(s) 13, 82, 294
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 81
SphI GCATGC 1 cut(s) 8
Sse9I AATT 4 cut(s) 95, 235, 315, 386
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 228
TasI AATT 4 cut(s) 95, 235, 315, 386
TfiI GAWTC 3 cut(s) 161, 322, 340
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 108, 294
TspRI CASTG 1 cut(s) 25
XapI RAATTY 3 cut(s) 95, 315, 386
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.