RchiOBHm_Chr2g0155051

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000102
Physical Location & Seq
Forward (+)
72070919 .. 72072628
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52397

Sequence Viewer

Length: 375 bp
ATGCGATCCAACGTGATCATTTACGTTAGATTCTGGCTGTGGCATGCTTTTATTCTACTGCTGCTTACTTCCAACTTTGCTCTTGCACAGTCTATCATCAAGAACTTACCAGCCTTCCAGGGTGACCTCCCTTTCAAGCTTGAAACTGGGTATGTGGGCGTGGGAGATTCAGAAGAGGTGCAACTGCTCTACTACTTTGTTGAGTCAGAAAGGAGTCCAGAAAATGATCCTCTGCTGATTTGGTTGACAGGAGGTCCTCGATGCTCTTCGTTTTATGGCCTCATCTACGAAGTTGGTAGCAAACATCATATTCTTAGATGCTCCTGCTGGTACTGTTTACTCCTACTCCACCACTTTCCACGGGTTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

124

Amino Acids

14.41

Weight (kDa)

6.49

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 100 3e-21 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AfaI GTAC 1 cut(s) 332
AgsI TTSAA 2 cut(s) 136, 143
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 15
BfaI CTAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 251, 308
BmuI ACTGGG 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 118, 359
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 118, 359
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 279
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 5, 15, 226
BspANI GGCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 118, 359
BssMI GATC 3 cut(s) 5, 15, 226
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 90, 335
Bst6I CTCTTC 2 cut(s) 168, 271
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 122
BstKTI GATC 3 cut(s) 8, 18, 229
BstMBI GATC 3 cut(s) 5, 15, 226
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 37, 113, 139, 279
CviKI_1 RGCY 4 cut(s) 37, 113, 139, 279
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 314
DpnI GATC 3 cut(s) 7, 17, 228
DpnII GATC 3 cut(s) 5, 15, 226
DriI GACNNNNNGTC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 168, 271
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 2 cut(s) 168, 271
Eco47I GGWCC 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 47
FaiI YATR 4 cut(s) 45, 153, 276, 309
FatI CATG 1 cut(s) 43
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 373
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 30, 167, 203, 214
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 246, 338
Hpy188I TCNGA 2 cut(s) 172, 208
Hpy188III TCNNGA 2 cut(s) 100, 218
Hpy8I GTNNAC 2 cut(s) 246, 338
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 90, 335
HpyCH4IV ACGT 2 cut(s) 12, 24
HpyCH4V TGCA 2 cut(s) 86, 181
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 12, 24
Hsp92II CATG 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 5, 15, 226
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 9 cut(s) 19, 104, 123, 131, 132, 231, 234, 313, 337
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 251, 308
MaeI CTAG 1 cut(s) 373
MaeII ACGT 2 cut(s) 12, 24
MaeIII GTNAC 1 cut(s) 122
MalI GATC 3 cut(s) 7, 17, 228
MboI GATC 3 cut(s) 5, 15, 226
MboII GAAGA 2 cut(s) 185, 258
MlyI GAGTC 2 cut(s) 212, 223
MmeI TCCRAC 2 cut(s) 33, 96
MnlI CCTC 6 cut(s) 137, 169, 240, 245, 267, 290
MseI TTAA 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NdeII GATC 3 cut(s) 5, 15, 226
NlaIII CATG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 30, 167
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 2 cut(s) 211, 222
PpsI GAGTC 2 cut(s) 211, 222
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 3 cut(s) 5, 15, 226
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 212, 223
ScrFI CCNGG 1 cut(s) 119
SetI ASST 6 cut(s) 15, 27, 129, 141, 180, 256
SfaNI GCATC 2 cut(s) 251, 308
SinI GGWCC 1 cut(s) 254
SphI GCATGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 90, 335
TaiI ACGT 2 cut(s) 15, 27
TaqI TCGA 1 cut(s) 259
TfiI GAWTC 2 cut(s) 30, 167
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 254
XceI RCATGY 1 cut(s) 47
XspI CTAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.