Rorug04G0031100

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
4540021 .. 4541710
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0031100.1

Sequence Viewer

Length: 828 bp
ATGGGAAGAAACTCAGGTTTCGAAAAGGACGGATTGAAGAAAGGTATGTGGTCTGCTCGCGAAGACCACGTTCTCAAGAACTACGTCAAAAAGCACGGTCCAGGCAACTGGGGGAAAACAGCAAGGGAGACTGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGATGAAGAAGACCTTATTATCAGGATGCACAAACTCGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACAGACAATGAAATAAAAAACTACTGGAACTCTACTCTAAGGAAGAAACTGGCAGAACAGAAAGAAATGGAATCAGAAGTGTCGAGAAACGAAATGGTAAAGGAGAACTTGCCATTCCCCGTTGAGGACGATGGTCATCAACATTTGACCAAATGCGATGTAGTTCTTGGCGGAGGAGGAGGAGGAGGAGGATTGATGTGTTTTGCCAGTAATGTTAATGTAGAAGAAGATCATCAGCGTCGTTGTCTTGGCGGTACTAGTACCGATACTACTATACTGAGTCCCAGAGTGGGAGTCGGAACCGGAGGCGGGGCAAACAATAATATCGAACCAACTGGGGATGATCTCAATTATAACGCCATGACCTGGAACGATTCGATAATGGATTTGAATGGAGGCCAACTCTACATGTCTGAATTCCTCCAAACTGAATTTTCGAAGTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTCGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

6.2

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 8.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 7.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 663
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 468, 549, 606
AcsI RAATTY 3 cut(s) 713, 728, 766
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 553, 559
AfiI CCNNNNNNNGG 4 cut(s) 421, 587, 606, 663
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 4 cut(s) 37, 175, 688, 773
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 2 cut(s) 100, 662
Alw26I GTCTC 2 cut(s) 122, 154
AoxI GGCC 3 cut(s) 185, 292, 694
ApeKI GCWGC 1 cut(s) 786
ApoI RAATTY 3 cut(s) 713, 728, 766
AseI ATTAAT 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 2 cut(s) 189, 291
AsuII TTCGAA 2 cut(s) 21, 734
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 69, 231
BbvI GCAGC 1 cut(s) 798
BccI CCATC 3 cut(s) 162, 422, 815
BciT130I CCWGG 2 cut(s) 102, 664
BcnI CCSGG 2 cut(s) 189, 291
BcoDI GTCTC 2 cut(s) 122, 154
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 1 cut(s) 555
BisI GCNGC 1 cut(s) 787
BlsI GCNGC 1 cut(s) 788
Bme1390I CCNGG 4 cut(s) 102, 189, 291, 664
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 4 cut(s) 102, 189, 291, 664
BmrI ACTGGG 2 cut(s) 118, 642
BmsI GCATC 1 cut(s) 231
BmuI ACTGGG 2 cut(s) 118, 642
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 69, 231
BplI GAGNNNNNCTC 2 cut(s) 684, 716
Bpu14I TTCGAA 2 cut(s) 21, 734
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 189, 291
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 587, 606, 663
Bse1I ACTGG 6 cut(s) 113, 136, 326, 351, 504, 637
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 102, 664
BseGI GGATG 3 cut(s) 246, 643, 826
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 421, 587, 606, 663
BseMII CTCAG 4 cut(s) 27, 155, 173, 566
BseNI ACTGG 6 cut(s) 113, 136, 326, 351, 504, 637
BseRI GAGGAG 5 cut(s) 486, 489, 492, 495, 498
BseXI GCAGC 1 cut(s) 798
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 187, 294, 696
BsiSI CCGG 3 cut(s) 189, 290, 600
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 4 cut(s) 421, 587, 606, 663
BsmAI GTCTC 2 cut(s) 122, 154
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 3 cut(s) 187, 294, 696
Bsp119I TTCGAA 2 cut(s) 21, 734
Bsp143I GATC 2 cut(s) 526, 640
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 3 cut(s) 468, 549, 606
BspANI GGCC 3 cut(s) 187, 294, 696
BspCNI CTCAG 4 cut(s) 26, 156, 174, 567
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 762, 799
BspLI GGNNCC 1 cut(s) 598
BspT104I TTCGAA 2 cut(s) 21, 734
BsrI ACTGG 6 cut(s) 113, 136, 326, 351, 504, 637
BssMI GATC 2 cut(s) 526, 640
Bst2UI CCWGG 2 cut(s) 102, 664
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 134, 146
BstBI TTCGAA 2 cut(s) 21, 734
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 13, 164, 182, 335, 575
BstF5I GGATG 3 cut(s) 246, 643, 826
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 2 cut(s) 529, 643
BstMAI GTCTC 2 cut(s) 122, 154
BstMBI GATC 2 cut(s) 526, 640
BstNI CCWGG 2 cut(s) 102, 664
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 4 cut(s) 100, 187, 289, 662
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 798
BstV2I GAAGAC 2 cut(s) 69, 231
BstXI CCANNNNNNTGG 2 cut(s) 108, 816
BsuRI GGCC 3 cut(s) 187, 294, 696
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 3 cut(s) 246, 643, 826
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 2 cut(s) 762, 799
Cfr13I GGNCC 3 cut(s) 98, 186, 292
CseI GACGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 552, 558
CviAII CATG 4 cut(s) 658, 706, 763, 800
CviJI RGCY 3 cut(s) 187, 294, 696
CviKI_1 RGCY 3 cut(s) 187, 294, 696
CviQI GTAC 2 cut(s) 552, 558
DdeI CTNAG 5 cut(s) 13, 164, 182, 335, 575
DpnI GATC 2 cut(s) 528, 642
DpnII GATC 2 cut(s) 526, 640
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
EciI GGCGGA 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 100, 662
FaeI CATG 4 cut(s) 661, 709, 766, 803
FaiI YATR 7 cut(s) 47, 572, 651, 659, 707, 764, 801
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 389, 421
FaqI GGGAC 1 cut(s) 564
FatI CATG 4 cut(s) 657, 705, 762, 799
FauI CCCGC 1 cut(s) 599
Fnu4HI GCNGC 1 cut(s) 787
FokI GGATG 2 cut(s) 253, 650
Fsp4HI GCNGC 1 cut(s) 787
FspBI CTAG 1 cut(s) 555
GluI GCNGC 1 cut(s) 787
HaeIII GGCC 3 cut(s) 187, 294, 696
HapII CCGG 3 cut(s) 189, 290, 600
HgaI GACGC 1 cut(s) 524
Hin1II CATG 4 cut(s) 661, 709, 766, 803
HinfI GANTC 5 cut(s) 286, 368, 577, 591, 671
HpaII CCGG 3 cut(s) 189, 290, 600
Hpy188I TCNGA 6 cut(s) 138, 183, 373, 596, 712, 779
Hpy188III TCNNGA 7 cut(s) 59, 76, 196, 238, 381, 763, 800
Hpy99I CGWCG 1 cut(s) 540
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 69, 84
HpyCH4V TGCA 2 cut(s) 244, 786
HpyF3I CTNAG 5 cut(s) 13, 164, 182, 335, 575
HpySE526I ACGT 2 cut(s) 69, 84
Hsp92II CATG 4 cut(s) 661, 709, 766, 803
Kzo9I GATC 2 cut(s) 526, 640
Lsp1109I GCAGC 1 cut(s) 798
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 555
MaeII ACGT 2 cut(s) 69, 84
MalI GATC 2 cut(s) 528, 642
MboI GATC 2 cut(s) 526, 640
MluCI AATT 6 cut(s) 175, 646, 713, 728, 766, 814
MlyI GAGTC 2 cut(s) 586, 600
MmeI TCCRAC 2 cut(s) 574, 757
MseI TTAA 3 cut(s) 513, 795, 826
MspI CCGG 3 cut(s) 189, 290, 600
MspR9I CCNGG 4 cut(s) 102, 189, 291, 664
MvaI CCWGG 2 cut(s) 102, 664
MvnI CGCG 1 cut(s) 60
NciI CCSGG 2 cut(s) 189, 291
NdeII GATC 2 cut(s) 526, 640
NlaIII CATG 4 cut(s) 661, 709, 766, 803
NlaIV GGNNCC 1 cut(s) 598
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 709
NspV TTCGAA 2 cut(s) 21, 734
PagI TCATGA 2 cut(s) 762, 799
PciI ACATGT 1 cut(s) 705
PfeI GAWTC 3 cut(s) 286, 368, 671
PflMI CCANNNNNTGG 1 cut(s) 663
PkrI GCNGC 1 cut(s) 788
PleI GAGTC 2 cut(s) 585, 599
PpsI GAGTC 2 cut(s) 585, 599
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 429
PshBI ATTAAT 1 cut(s) 795
PsiI TTATAA 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 100, 662
PspGI CCWGG 2 cut(s) 100, 662
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 3 cut(s) 98, 186, 292
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 553, 559
RsaNI GTAC 2 cut(s) 552, 558
SaqAI TTAA 3 cut(s) 513, 795, 826
SatI GCNGC 1 cut(s) 787
Sau3AI GATC 2 cut(s) 526, 640
Sau96I GGNCC 3 cut(s) 98, 186, 292
SchI GAGTC 2 cut(s) 586, 600
ScrFI CCNGG 4 cut(s) 102, 189, 291, 664
SetI ASST 9 cut(s) 19, 46, 72, 87, 231, 266, 665, 761, 784
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 21, 734
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 6 cut(s) 175, 646, 713, 728, 766, 814
SsiI CCGC 3 cut(s) 468, 549, 606
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 4 cut(s) 100, 187, 289, 662
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 72, 87
TaqI TCGA 5 cut(s) 21, 380, 624, 674, 734
TasI AATT 6 cut(s) 175, 646, 713, 728, 766, 814
TfiI GAWTC 3 cut(s) 286, 368, 671
Tru1I TTAA 3 cut(s) 513, 795, 826
Tru9I TTAA 3 cut(s) 513, 795, 826
TseI GCWGC 1 cut(s) 786
TspDTI ATGAA 4 cut(s) 234, 321, 751, 779
TspGWI ACGGA 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 663
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 3 cut(s) 713, 728, 766
XceI RCATGY 1 cut(s) 709
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.