Rorug03G0171900

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000102
Physical Location & Seq
Reverse (-)
14520197 .. 14520940
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0171900.1

Sequence Viewer

Length: 744 bp
ATGCGGGATGGATTGTGGCGGAGGTGGGTAGATCGCGGCAGAGGGGATCCCCGTAGGGATCTGTTTCTGTCATGCGTTGGGATCTGGTTGTGGTTGTCAGCAGGATGTAGATCCTGTTTGCAACTGGGCAAAGTGGTGCGACGGTGTCAGGGAGCAGCGAGGCAGTGGGGGGATGACGATGGTGTTTGCCGACGGCGGGGAGGGGTATCTGCAGTGCTTGATTGCTGGTGGGGGAAGTGGTGTATAGGCCGGGTCCCTGTCTTTGGGCCTTGTTGTCGTTTGGGTTTAATTAAGGTTTTTTGTTTGGTTTTATTTAGGGTTGTTTGTTTGGTTAGTTTAGGTTTAATAAGTCTCTACTCCTTCGAGCTAGGGTTTGGGAGTCGTGGTCTGCTTGGCGTGCCATTATTGTGGCGTTACTCCGAGGAATTATGGGTTTTAGTTTCGGTGCTTTCTGGTTGTCAACATGAGGGTGGATGGCCTTTGCACGTGGTCTGGCGGTACTTGGACACGGTGTTGAAGAGGGTAAATTGGCTCGGTCTAATGTTGGTGGCAAGGTTGTATCGGTACTCTCGGGAAGTAGCTCGTGGTTTCGGGCGTAAAATTTGGTTAGGGGTTGGGCTCATTTGTCTCATGGATGTTGCTATTAGCGACGGACCCATAACTATGGATCTTTGTAGGAATGTGTGTCGTGGTGTAGTACCACAACCGGTCATTCCAATGCGTTGTAATCTTTTCGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

9.6

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33540 AT1G33540 AT1G73270 AT1G73270 AT1G73280 AT1G73280 AT1G73280 AT1G73280 AT1G73290 AT1G73290 AT1G73290 AT1G73300 AT1G73300 AT1G73310 AT1G73310 AT1G73310 AT2G22920 AT2G22920 AT2G22920 AT2G22920 AT2G22960 AT2G22970 AT2G22970 AT2G22970 AT2G22970 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22980 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G22990 AT2G23000 AT2G23000 AT2G23010 AT2G23010 AT3G10450 AT3G10450 AT3G10450 AT3G10450 AT3G12203 AT3G12203 AT3G12203 AT3G12220 AT3G12220 AT3G12220 AT3G12230 AT3G12240 AT5G09640 AT5G36180 AT5G36180 AT5G36180 AT5G36180 AT5G36180
fragaria_vesca FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_1g17970 FvH4_2g03550 FvH4_2g03550 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03560 FvH4_2g03570 FvH4_2g03570 FvH4_2g03570 FvH4_2g32860 FvH4_2g32860 FvH4_2g32860 FvH4_6g45780
malus_domestica MD05G1102900.v1.1 MD05G1103100.v1.1 MD05G1103400.v1.1 MD05G1103600.v1.1 MD15G1067200.v1.1 MD15G1299100.v1.1 MD15G1299200.v1.1
prunus_persica Prupe.6G218600_v2.0.a1 Prupe.6G218800_v2.0.a1 Prupe.8G129900_v2.0.a1 Prupe.8G130000_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G135600_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147500_v2.0.a1 Prupe.8G147600_v2.0.a1 Prupe.8G147700_v2.0.a1 Prupe.8G147800_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G147900_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148000_v2.0.a1 Prupe.8G148300_v2.0.a1
pyrus_communis pycom05g10060 pycom08g20430 pycom10g09380 pycom15g06370
rosa_chinensis RchiOBHm_Chr2g0108421 RchiOBHm_Chr2g0155051 RchiOBHm_Chr2g0176791 RchiOBHm_Chr5g0035721 RchiOBHm_Chr5g0035731 RchiOBHm_Chr5g0043261 RchiOBHm_Chr6g0249011 RchiOBHm_Chr6g0249021 RchiOBHm_Chr6g0249041 RchiOBHm_Chr6g0249051 RchiOBHm_Chr6g0249071 RchiOBHm_Chr6g0249091 RchiOBHm_Chr6g0249111 RchiOBHm_Chr6g0249131 RchiOBHm_Chr6g0249151 RchiOBHm_Chr6g0252461 RchiOBHm_Chr6g0252481 RchiOBHm_Chr6g0252491
rosa_laevigata RLG00000001434 RLG00000015094 RLG00000015095 RLG00000015096 RLG00000015099 RLG00000015101 RLG00000015103 RLG00000017668
rosa_multiflora Rmu_co7960301.1_g000001 Rmu_co8316227.1_g000001 Rmu_co8338197.1_g000001 Rmu_co8348961.1_g000001 Rmu_sc0000290.1_g000001 Rmu_sc0000290.1_g000008 Rmu_sc0001762.1_g000019 Rmu_sc0001762.1_g000023 Rmu_sc0002016.1_g000008 Rmu_sc0002016.1_g000013 Rmu_sc0002016.1_g000016 Rmu_sc0002372.1_g000025 Rmu_sc0003692.1_g000002 Rmu_sc0003692.1_g000012 Rmu_sc0003780.1_g000008 Rmu_sc0003829.1_g000040 Rmu_sc0004823.1_g000035 Rmu_sc0004832.1_g000025 Rmu_sc0006782.1_g000011 Rmu_sc0006782.1_g000015 Rmu_sc0007382.1_g000001 Rmu_sc0009208.1_g000009 Rmu_sc0017474.1_g000001 Rmu_sc0026593.1_g000002 Rmu_sc0028609.1_g000001 Rmu_ssc0000007.1_g000002
rosa_roxburghii Rroxscaffold_1G00023310 Rroxscaffold_2G00135160 Rroxscaffold_2G00135410 Rroxscaffold_7G00212680 Rroxscaffold_7G00212690 Rroxscaffold_7G00212710 Rroxscaffold_7G00212730 Rroxscaffold_7G00212740 Rroxscaffold_7G00212770 Rroxscaffold_7G00212780
rosa_rugosa Rorug02G0152900 Rorug02G0153000 Rorug02G0153100 Rorug02G0153200 Rorug02G0153300 Rorug03G0171900 Rorug04G0031100 Rorug04G0031100 Rorug04G0031100 Rorug05G0033600 Rorug05G0033700 Rorug05G0033700 Rorug05G0534900 Rorug05G0534900 Rorug05G0535000 Rorug05G0535100 Rorug05G0535200 Rorug05G0535300 Rorug05G0535400.1 Rorug05G0535500.1 Rorug05G0535600 Rorug05G0535700 Rorug05G0535900 Rorug05G0536000.1 Rorug05G0536100.1 Rorug05G0536200 Rorug05G0536200 Rorug05G0536300 Rorug06G0002300
rosa_samantha Rh1AG086800 Rh1BG137200 Rh2AG201800 Rh2BG214700 Rh2CG205900 Rh2CG650900 Rh2DG209100 Rh2DG683600 Rh2DG701600 Rh4DG048600 Rh5BG257100 Rh5BG296800 Rh5DG266200 Rh5DG306500 Rh6AG052300 Rh6AG052500 Rh6BG009400 Rh6BG045800 Rh6BG046000 Rh6BG046100 Rh6BG046300 Rh6BG046400 Rh6BG046500 Rh6CG044400 Rh6CG044500 Rh6CG044600 Rh6CG044900 Rh6CG045100 Rh6CG045200 Rh6CG178800 Rh6DG039600 Rh6DG039800 Rh6DG040100 Rh6DG040600 Rh6DG040800 Rh6DG040900 Rh7AG465600 Rh7CG509300 Rh7DG476900
rosa_wichuraiana Rw0G003830 Rw1G008040 Rw2G016060 Rw2G016130 Rw2G053970 Rw4G021320 Rw6G004520 Rw6G004560 Rw6G004640 Rw6G004660 Rw6G004670 Rw6G004680 Rw6G004700 Rw6G004720 Rw6G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AciI CCGC 5 cut(s) 4, 19, 36, 196, 496
AclWI GGATC 6 cut(s) 41, 54, 66, 89, 105, 675
AcsI RAATTY 1 cut(s) 600
AcvI CACGTG 1 cut(s) 487
AfaI GTAC 3 cut(s) 500, 566, 699
AfiI CCNNNNNNNGG 2 cut(s) 196, 263
AgeI ACCGGT 1 cut(s) 706
AgsI TTSAA 1 cut(s) 517
AluBI AGCT 2 cut(s) 367, 581
AluI AGCT 2 cut(s) 367, 581
Alw26I GTCTC 2 cut(s) 356, 632
AlwI GGATC 6 cut(s) 41, 54, 66, 89, 105, 675
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 3 cut(s) 247, 266, 476
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 600
AsiGI ACCGGT 1 cut(s) 706
AspS9I GGNCC 3 cut(s) 253, 266, 653
AsuC2I CCSGG 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 2 cut(s) 253, 653
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 621
BauI CACGAG 1 cut(s) 582
BbrPI CACGTG 1 cut(s) 487
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 2, 173, 468
BceAI ACGGC 1 cut(s) 209
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 356, 632
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 37, 156
BlsI GCNGC 2 cut(s) 38, 157
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 253, 653
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 3 cut(s) 253, 266, 653
BmiI GGNNCC 4 cut(s) 48, 254, 255, 655
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 263
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 5 cut(s) 13, 110, 178, 479, 640
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 196, 263
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 3 cut(s) 249, 268, 478
BshTI ACCGGT 1 cut(s) 706
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 2 cut(s) 250, 707
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 196, 263
BsmAI GTCTC 2 cut(s) 356, 632
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 3 cut(s) 249, 268, 478
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 6 cut(s) 31, 46, 58, 81, 110, 667
BspACI CCGC 5 cut(s) 4, 19, 36, 196, 496
BspANI GGCC 3 cut(s) 249, 268, 478
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 48, 254, 255, 655
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 6 cut(s) 41, 54, 66, 89, 105, 675
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 6 cut(s) 31, 46, 58, 81, 110, 667
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 144, 511
Bst6I CTCTTC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 398
BstF5I GGATG 5 cut(s) 13, 110, 178, 479, 640
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 6 cut(s) 34, 49, 61, 84, 113, 670
BstMAI GTCTC 2 cut(s) 356, 632
BstMBI GATC 6 cut(s) 31, 46, 58, 81, 110, 667
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 5 cut(s) 46, 58, 81, 110, 667
BstXI CCANNNNNNTGG 2 cut(s) 408, 664
BstYI RGATCY 5 cut(s) 46, 58, 81, 110, 667
BsuRI GGCC 3 cut(s) 249, 268, 478
BtsCI GGATG 5 cut(s) 13, 110, 178, 479, 640
BtsI GCAGTG 2 cut(s) 170, 219
BtsIMutI CAGTG 2 cut(s) 170, 219
Cac8I GCNNGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 3 cut(s) 253, 266, 653
Csp6I GTAC 3 cut(s) 499, 565, 698
CspAI ACCGGT 1 cut(s) 706
CviAII CATG 3 cut(s) 72, 464, 631
CviJI RGCY 7 cut(s) 249, 268, 367, 478, 532, 581, 619
CviKI_1 RGCY 7 cut(s) 249, 268, 367, 478, 532, 581, 619
CviQI GTAC 3 cut(s) 499, 565, 698
DpnI GATC 6 cut(s) 33, 48, 60, 83, 112, 669
DpnII GATC 6 cut(s) 31, 46, 58, 81, 110, 667
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 253, 653
Eco72I CACGTG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 621
FaeI CATG 3 cut(s) 75, 467, 634
FaiI YATR 7 cut(s) 73, 245, 430, 465, 632, 659, 665
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 71, 463, 630
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 37, 156
FokI GGATG 5 cut(s) 20, 117, 185, 486, 647
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 2 cut(s) 37, 156
FspBI CTAG 1 cut(s) 368
GluI GCNGC 2 cut(s) 37, 156
HaeIII GGCC 3 cut(s) 249, 268, 478
HapII CCGG 2 cut(s) 250, 707
Hin1II CATG 3 cut(s) 75, 467, 634
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 1 cut(s) 379
HpaII CCGG 2 cut(s) 250, 707
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 572
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 3 cut(s) 144, 195, 653
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 144, 511
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 3 cut(s) 121, 212, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 3 cut(s) 75, 467, 634
KflI GGGWCCC 1 cut(s) 253
Kzo9I GATC 6 cut(s) 31, 46, 58, 81, 110, 667
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 413
MalI GATC 6 cut(s) 33, 48, 60, 83, 112, 669
MboI GATC 6 cut(s) 31, 46, 58, 81, 110, 667
MboII GAAGA 1 cut(s) 529
MflI RGATCY 5 cut(s) 46, 58, 81, 110, 667
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 4 cut(s) 288, 425, 526, 600
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 7 cut(s) 15, 35, 153, 194, 415, 460, 513
MseI TTAA 4 cut(s) 287, 291, 344, 742
MslI CAYNNNNRTG 4 cut(s) 406, 468, 662, 716
MspI CCGG 2 cut(s) 250, 707
MspR9I CCNGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 1 cut(s) 251
NdeII GATC 6 cut(s) 31, 46, 58, 81, 110, 667
NlaIII CATG 3 cut(s) 75, 467, 634
NlaIV GGNNCC 4 cut(s) 48, 254, 255, 655
PacI TTAATTAA 1 cut(s) 291
PflFI GACNNNGTC 1 cut(s) 144
PinAI ACCGGT 1 cut(s) 706
PkrI GCNGC 2 cut(s) 38, 157
PleI GAGTC 1 cut(s) 387
PmaCI CACGTG 1 cut(s) 487
PmlI CACGTG 1 cut(s) 487
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspCI CACGTG 1 cut(s) 487
PspN4I GGNNCC 4 cut(s) 48, 254, 255, 655
PspPI GGNCC 3 cut(s) 253, 266, 653
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 5 cut(s) 46, 58, 81, 110, 667
PsyI GACNNNGTC 1 cut(s) 144
RsaI GTAC 3 cut(s) 500, 566, 699
RsaNI GTAC 3 cut(s) 499, 565, 698
RseI CAYNNNNRTG 4 cut(s) 406, 468, 662, 716
SaqAI TTAA 4 cut(s) 287, 291, 344, 742
SatI GCNGC 2 cut(s) 37, 156
Sau3AI GATC 6 cut(s) 31, 46, 58, 81, 110, 667
Sau96I GGNCC 3 cut(s) 253, 266, 653
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 621
SetI ASST 7 cut(s) 26, 297, 343, 369, 489, 557, 583
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 2 cut(s) 253, 653
SmiMI CAYNNNNRTG 4 cut(s) 406, 468, 662, 716
Sse9I AATT 4 cut(s) 288, 425, 526, 600
SsiI CCGC 5 cut(s) 4, 19, 36, 196, 496
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 144, 511
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 363
TaqII GACCGA 1 cut(s) 524
TasI AATT 4 cut(s) 288, 425, 526, 600
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 4 cut(s) 287, 291, 344, 742
Tru9I TTAA 4 cut(s) 287, 291, 344, 742
TscAI CASTG 2 cut(s) 170, 219
TseI GCWGC 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 2 cut(s) 170, 219
Tth111I GACNNNGTC 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 253, 653
XapI RAATTY 1 cut(s) 600
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.