RLG00000015104

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002263
Physical Location & Seq
Reverse (-)
61817510 .. 61820598
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015104

Sequence Viewer

Length: 1254 bp
ATGGCATTTGGTTCTGGCAACAACACCATGAGTTGGGTTTGTTTGCATTTGCTTCTTGTTTTGGTTTTCTCAGCAAAGACAGTTCTTTGTGGCACACTGGTCAAGTCTATTCCGGGTTTCGATGGTGATCTTCCTTTTAAGCTCTACACTGGGTATGTCAGTGTGGGTAAAGCAGAGATGTTTTACTACTTCATTGAGTCAGAAGGAAACCCCACAGAAGATCCTTTGTTGTTGTGGTATAGTGGGGGCCCTGGTTGTTCTGTTTTAAGTGGTATCATATACGAAAATGGTCCTATGGTTTTCAATTATACAGCTTATGAAGGAGGGTTACCATCTACATGTGTATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCAAATAGTGCAGATGAATTCCCTTCTTCAGATTTAAAAACAGCAGCACAGGTTTATGGATTTTTGAGGGAGTGGTTGCAAGAGCACCCACAATTTCTCAAAGTTCAGCTATTTATTGGGGCTGACTCATATTCTGGCCTGACGGGCACCATCGTTGTCAAATACATAATAGATGACAATGATGCTGGAGTACTGCCACGACTCAACCTCAAGGCAGCTAAAGAAAGCTGCAATTCAAGTTTCTATGGTGCTACCACGTCAGAGCCAGAATGCTATGAGGACGTTCAATTGATGGCAAAGAGCCAAAGTGCATCCCCAGACCAAGATGGAGAAACAGCTCGTAGATATTTACATGAAAATCCCGAAGAATTCATCCGGTCACTTCCAAAAGATCCTGAATACTACTGTCGAAACAACAATTATATGCTGGCTTATGTATGGGCAAACGATGAAGGTGTAAGAAAGGCACTTAATGTCAGAGAGGGAACAGTACTAGATTGGAAGAGATGCAATAAAAGTTTGTCATACACAGAAGATGTGGAAAGTGTTGTTGAGTATCATAAATACCTCAGTACCAAGGGATTACAAGTTCTGATATTCAATGGTGATCATGACCTTACTGTCCCAAACACCGGTACAGAACAGTGGATAAGAAGTTTGGATTTGCCTGTTGTCAATGATTGGAGACCGTGGCTAGTTGATGGTCAAATTGCTGGATACACTGTCAAGTATTCAAGTAGTGAGGGATACCGTTTGACTTATGCAACTGTAAAGGGTGCTGAGCACTCAGCTCCAGAATACAAGCGTAGGGAATGTTATATCATGTTTGATAGCTCTGAGGAGCTGTTCTACTCCAGTATGGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

418

Amino Acids

46.7

Weight (kDa)

4.73

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 200 4.3e-47 Serine carboxypeptidase
Peptidase_S10 PF00450 201 - 406 5.9e-34 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1004
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 33
AclWI GGATC 2 cut(s) 215, 770
AcsI RAATTY 2 cut(s) 401, 752
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 4 cut(s) 576, 876, 958, 1021
AfiI CCNNNNNNNGG 2 cut(s) 33, 1016
AflIII ACRYGT 1 cut(s) 338
AgeI ACCGGT 1 cut(s) 1016
AgsI TTSAA 5 cut(s) 304, 621, 671, 985, 1119
AjiI CACGTC 1 cut(s) 642
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 957, 989
AluBI AGCT 9 cut(s) 142, 314, 493, 602, 612, 722, 1175, 1218, 1228
AluI AGCT 9 cut(s) 142, 314, 493, 602, 612, 722, 1175, 1218, 1228
Alw21I GWGCWC 2 cut(s) 471, 1170
Alw26I GTCTC 1 cut(s) 1063
AlwI GGATC 2 cut(s) 215, 770
AoxI GGCC 2 cut(s) 247, 520
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 428, 599, 612
ApoI RAATTY 2 cut(s) 401, 752
AsiGI ACCGGT 1 cut(s) 1016
AspS9I GGNCC 3 cut(s) 247, 248, 290
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 137, 1001
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 2 cut(s) 251, 533
BaeI ACNNNNGTAYC 2 cut(s) 940, 973
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
Bbv12I GWGCWC 2 cut(s) 471, 1170
BbvI GCAGC 3 cut(s) 440, 599, 611
BccI CCATC 6 cut(s) 116, 340, 542, 670, 704, 1079
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 2 cut(s) 1094, 1124
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 1063
BfaI CTAG 3 cut(s) 878, 1079, 1252
BfuI GTATCC 2 cut(s) 1094, 1124
BglI GCCNNNNNGGC 1 cut(s) 528
BisI GCNGC 3 cut(s) 429, 600, 613
BlpI GCTNAGC 1 cut(s) 1164
BlsI GCNGC 3 cut(s) 430, 601, 614
BmcAI AGTACT 2 cut(s) 576, 876
Bme1390I CCNGG 2 cut(s) 114, 252
Bme18I GGWCC 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 642
BmgT120I GGNCC 3 cut(s) 247, 248, 290
BmiI GGNNCC 3 cut(s) 248, 249, 532
BmrFI CCNGG 2 cut(s) 114, 252
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 4 cut(s) 346, 556, 704, 881
BmuI ACTGGG 1 cut(s) 159
BpmI CTGGAG 3 cut(s) 591, 1161, 1222
Bpu1102I GCTNAGC 1 cut(s) 1164
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 1063
BsaJI CCNNGG 3 cut(s) 250, 960, 1073
BsaWI WCCGGW 2 cut(s) 759, 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 1016
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 4 cut(s) 102, 154, 376, 1239
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 250, 960, 1073
BseGI GGATG 3 cut(s) 361, 695, 756
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 33, 1016
BseMII CTCAG 5 cut(s) 84, 967, 1155, 1185, 1212
BseNI ACTGG 4 cut(s) 102, 154, 376, 1239
BseRI GAGGAG 1 cut(s) 1238
BseSI GKGCMC 2 cut(s) 251, 533
BseXI GCAGC 3 cut(s) 440, 599, 611
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 2 cut(s) 249, 522
BshNI GGYRCC 1 cut(s) 530
BshTI ACCGGT 1 cut(s) 1016
BsiHKAI GWGCWC 2 cut(s) 471, 1170
BsiSI CCGG 3 cut(s) 113, 760, 1017
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 2 cut(s) 33, 1016
BsmAI GTCTC 1 cut(s) 1063
BsmFI GGGAC 1 cut(s) 992
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 2 cut(s) 249, 522
Bso31I GGTCTC 1 cut(s) 1063
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 4 cut(s) 251, 471, 533, 1170
Bsp143I GATC 4 cut(s) 127, 220, 775, 991
Bsp1720I GCTNAGC 1 cut(s) 1164
BspANI GGCC 2 cut(s) 249, 522
BspCNI CTCAG 5 cut(s) 83, 966, 1156, 1184, 1213
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 3 cut(s) 248, 249, 532
BspPI GGATC 2 cut(s) 215, 770
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 1063
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 4 cut(s) 102, 154, 376, 1239
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 3 cut(s) 250, 960, 1073
BssMI GATC 4 cut(s) 127, 220, 775, 991
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 9 cut(s) 82, 791, 874, 1006, 1029, 1074, 1108, 1136, 1153
Bst6I CTCTTC 1 cut(s) 881
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 5 cut(s) 70, 953, 1164, 1171, 1221
BstDSI CCRYGG 1 cut(s) 1073
BstEII GGTNACC 1 cut(s) 327
BstF5I GGATG 3 cut(s) 361, 695, 756
BstKTI GATC 4 cut(s) 130, 223, 778, 994
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 4 cut(s) 127, 220, 775, 991
BstMWI GCNNNNNNNGC 2 cut(s) 392, 528
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 112, 250
BstSLI GKGCMC 2 cut(s) 251, 533
BstV1I GCAGC 3 cut(s) 440, 599, 611
BstX2I RGATCY 2 cut(s) 220, 775
BstYI RGATCY 2 cut(s) 220, 775
BsuI GTATCC 2 cut(s) 1094, 1124
BsuRI GGCC 2 cut(s) 249, 522
BtgI CCRYGG 1 cut(s) 1073
BtrI CACGTC 1 cut(s) 642
BtsCI GGATG 3 cut(s) 361, 695, 756
BtsIMutI CAGTG 6 cut(s) 95, 147, 166, 369, 1034, 1104
Cac8I GCNNGC 1 cut(s) 813
CciI TCATGA 1 cut(s) 994
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 3 cut(s) 247, 248, 290
Csp6I GTAC 4 cut(s) 575, 875, 957, 1020
CspAI ACCGGT 1 cut(s) 1016
CviAII CATG 5 cut(s) 28, 339, 737, 995, 1207
CviQI GTAC 4 cut(s) 575, 875, 957, 1020
DdeI CTNAG 5 cut(s) 70, 953, 1164, 1171, 1221
DpnI GATC 4 cut(s) 129, 222, 777, 993
DpnII GATC 4 cut(s) 127, 220, 775, 991
DraI TTTAAA 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 1004
DseDI GACNNNNNNGTC 1 cut(s) 1004
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 960
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 327
EcoO109I RGGNCCY 2 cut(s) 247, 248
EcoO65I GGTNACC 1 cut(s) 327
EcoRI GAATTC 2 cut(s) 401, 752
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 960
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 5 cut(s) 31, 342, 740, 998, 1210
FaqI GGGAC 1 cut(s) 992
FatI CATG 5 cut(s) 27, 338, 736, 994, 1206
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 3 cut(s) 429, 600, 613
FokI GGATG 3 cut(s) 368, 682, 743
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 429, 600, 613
FspBI CTAG 3 cut(s) 878, 1079, 1252
GluI GCNGC 3 cut(s) 429, 600, 613
GsuI CTGGAG 3 cut(s) 591, 1161, 1222
HaeIII GGCC 2 cut(s) 249, 522
HapII CCGG 3 cut(s) 113, 760, 1017
Hin1II CATG 5 cut(s) 31, 342, 740, 998, 1210
HinfI GANTC 3 cut(s) 197, 509, 585
HpaII CCGG 3 cut(s) 113, 760, 1017
HphI GGTGA 2 cut(s) 137, 1001
Hpy188I TCNGA 6 cut(s) 202, 415, 646, 863, 978, 1222
Hpy188III TCNNGA 4 cut(s) 746, 779, 995, 1178
HpyAV CCTTC 4 cut(s) 197, 314, 417, 830
HpyCH4III ACNGT 9 cut(s) 82, 791, 874, 1006, 1029, 1074, 1108, 1136, 1153
HpyCH4IV ACGT 2 cut(s) 641, 666
HpyCH4V TGCA 9 cut(s) 46, 359, 386, 395, 463, 615, 695, 894, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 528
HpyF3I CTNAG 5 cut(s) 70, 953, 1164, 1171, 1221
HpySE526I ACGT 2 cut(s) 641, 666
Hsp92II CATG 5 cut(s) 31, 342, 740, 998, 1210
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 4 cut(s) 127, 220, 775, 991
LmnI GCTCC 2 cut(s) 1180, 1225
Lsp1109I GCAGC 3 cut(s) 440, 599, 611
LweI GCATC 4 cut(s) 346, 556, 704, 881
MaeI CTAG 3 cut(s) 878, 1079, 1252
MaeII ACGT 2 cut(s) 641, 666
MaeIII GTNAC 2 cut(s) 327, 762
MalI GATC 4 cut(s) 129, 222, 777, 993
MboI GATC 4 cut(s) 127, 220, 775, 991
MboII GAAGA 6 cut(s) 122, 230, 402, 761, 898, 929
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 2 cut(s) 220, 775
MhlI GDGCHC 4 cut(s) 251, 471, 533, 1170
MluCI AATT 8 cut(s) 304, 401, 476, 616, 671, 752, 802, 1092
MlyI GAGTC 3 cut(s) 206, 503, 579
MnlI CCTC 8 cut(s) 317, 444, 602, 655, 859, 962, 1120, 1216
MseI TTAA 4 cut(s) 138, 266, 419, 855
MslI CAYNNNNRTG 1 cut(s) 337
MspI CCGG 3 cut(s) 113, 760, 1017
MspR9I CCNGG 2 cut(s) 114, 252
MunI CAATTG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 392, 528
NciI CCSGG 1 cut(s) 114
NdeII GATC 4 cut(s) 127, 220, 775, 991
NlaIII CATG 5 cut(s) 31, 342, 740, 998, 1210
NlaIV GGNNCC 3 cut(s) 248, 249, 532
NmuCI GTSAC 1 cut(s) 762
NspI RCATGY 1 cut(s) 342
PagI TCATGA 1 cut(s) 994
PciI ACATGT 1 cut(s) 338
PctI GAATGC 1 cut(s) 659
PflMI CCANNNNNTGG 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 3 cut(s) 430, 601, 614
PleI GAGTC 3 cut(s) 205, 503, 579
PpsI GAGTC 3 cut(s) 205, 503, 579
PscI ACATGT 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 248, 249, 532
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 247, 248, 290
PsuI RGATCY 2 cut(s) 220, 775
RsaI GTAC 4 cut(s) 576, 876, 958, 1021
RsaNI GTAC 4 cut(s) 575, 875, 957, 1020
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 4 cut(s) 138, 266, 419, 855
SatI GCNGC 3 cut(s) 429, 600, 613
Sau3AI GATC 4 cut(s) 127, 220, 775, 991
Sau96I GGNCC 3 cut(s) 247, 248, 290
ScaI AGTACT 2 cut(s) 576, 876
SchI GAGTC 3 cut(s) 206, 503, 579
ScrFI CCNGG 2 cut(s) 114, 252
SduI GDGCHC 4 cut(s) 251, 471, 533, 1170
SfaNI GCATC 4 cut(s) 346, 556, 704, 881
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 8 cut(s) 304, 401, 476, 616, 671, 752, 802, 1092
SspMI CTAG 3 cut(s) 878, 1079, 1252
StyD4I CCNGG 2 cut(s) 112, 250
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 9 cut(s) 82, 791, 874, 1006, 1029, 1074, 1108, 1136, 1153
TaiI ACGT 2 cut(s) 644, 669
TaqI TCGA 2 cut(s) 120, 793
TasI AATT 8 cut(s) 304, 401, 476, 616, 671, 752, 802, 1092
TatI WGTACW 2 cut(s) 574, 874
Tru1I TTAA 4 cut(s) 138, 266, 419, 855
Tru9I TTAA 4 cut(s) 138, 266, 419, 855
TscAI CASTG 6 cut(s) 102, 154, 166, 376, 1034, 1111
TseFI GTSAC 1 cut(s) 762
TseI GCWGC 3 cut(s) 428, 599, 612
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 6 cut(s) 181, 333, 414, 745, 753, 849
TspRI CASTG 6 cut(s) 102, 154, 166, 376, 1034, 1111
Van91I CCANNNNNTGG 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 2 cut(s) 401, 752
XceI RCATGY 1 cut(s) 342
XspI CTAG 3 cut(s) 878, 1079, 1252
ZrmI AGTACT 2 cut(s) 576, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.