Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003692.1

Orthogroup ID

OG0002263

Physical Location & Seq

Genomic Coordinates Reverse (-)

89667 .. 92343

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003692.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgaactgggtttgtctgcatttgcttcttctactgatattctcagcaaatgcagttcactgtggcacattggtcaagtctcttccgggattcgatggtgaacttcctttcaacctctacactgggtatacgactgttaaaggatcagagatgttttactacttcgttgagtcggaaggagaccccaaagtggaccctttgttgctttggtacagtggtggccctggttgttctgctttcaatggcctcatttacgaaaatggtcctttggatttcaatcttacagattatgaaggaggtataccgaaaacttatcactacccatattcatggacaaggactgcaagcatattgtttgtggatgcacctgttggcactggtttctcctatgccactgatgcatcagaatatgctacctccgatacaaaaacagcagagcaggtttacggctttttgacagcgtctgctttagaaagctgtaatgcaagtttctatggagtaaccacagatcaaccagaatgttatgaggaccttcaattgattgcaaggcaaattaaagacataaacaaaaacaatattctggagccaaagtgcacatgggcttcgccaataaacgatgaagaaccagctcgtagatctatgcaggaaaatgaataccctgaagactacctccggtcacctctacagaatcctgagttctgtcataccttcagctattctttatcttatgtttgggcgaacagtgatgaagttcgagcagcacttaatatcagaaatggaacagtatttgattggaagcgatgcaataagagcttagattacacatatgatgtggcaagtgtcctcgaatatcatcaaaatctcagtaccaagggattacaagtgctgatattcaatggtgatcatgaccttataattccgaacaccggcacagaagcatggataaaaaagttgggtttgactattgttaatgattggagaccatggctagttgatggtcaaattgctgggtacaccatcaagtattcagaaaatggataccgcttgacatatgcaaccctaaaggtaccacctagcttcctacccaagtcatggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

366

Amino Acids

41.4

Weight (kDa)

4.73

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523
rosa_chinensis	RchiOBHm_Chr6g0248961 RchiOBHm_Chr6g0248981 RchiOBHm_Chr6g0248991 RchiOBHm_Chr6g0249001
rosa_laevigata	RLG00000015104 RLG00000015105 RLG00000015106
rosa_multiflora	Rmu_co8226213.1_g000001 Rmu_co8479945.1_g000001 Rmu_sc0003692.1_g000024 Rmu_sc0003692.1_g000025 Rmu_sc0003692.1_g000026
rosa_roxburghii	Rroxscaffold_7G00212800
rosa_rugosa	Rorug05G0534700 Rorug05G0534800 Rorug05G0534900
rosa_samantha	Rh6AG052000 Rh6AG052100 Rh6CG044100 Rh6CG044200 Rh6CG044300 Rh6DG039300 Rh6DG039400 Rh6DG039500
rosa_wichuraiana	Rw6G004610 Rw6G004620 Rw6G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
Acc36I	ACCTGC	1 cut(s)	430
Acc65I	GGTACC	1 cut(s)	1066
AccB1I	GGYRCC	1 cut(s)	1066
AccB7I	CCANNNNNTGG	1 cut(s)	1092
AccI	GTMKAC	2 cut(s)	128, 301
AciI	CCGC	1 cut(s)	1042
AclWI	GGATC	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	681, 694
AfaI	GTAC	4 cut(s)	212, 868, 1013, 1068
AfiI	CCNNNNNNNGG	3 cut(s)	190, 926, 1092
AgsI	TTSAA	5 cut(s)	112, 241, 277, 536, 895
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	5 cut(s)	477, 629, 714, 813, 1077
AluI	AGCT	5 cut(s)	477, 629, 714, 813, 1077
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	3 cut(s)	84, 174, 973
Alw44I	GTGCAC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	220, 244
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	1 cut(s)	758
Asp718I	GGTACC	1 cut(s)	1066
AspS9I	GGNCC	4 cut(s)	193, 221, 263, 529
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	110, 669, 911
AvaII	GGWCC	3 cut(s)	193, 263, 529
BaeGI	GKGCMC	1 cut(s)	596
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	1066
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	3 cut(s)	89, 989, 1025
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	1031
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	3 cut(s)	84, 174, 973
BfaI	CTAG	2 cut(s)	989, 1074
BfmI	CTRYAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	1031
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	2 cut(s)	87, 225
Bme18I	GGWCC	3 cut(s)	193, 263, 529
BmgT120I	GGNCC	4 cut(s)	193, 221, 263, 529
BmiI	GGNNCC	3 cut(s)	195, 585, 1068
BmrFI	CCNGG	2 cut(s)	87, 225
BmrI	ACTGGG	2 cut(s)	16, 132
BmsI	GCATC	4 cut(s)	352, 388, 410, 791
BmuI	ACTGGG	2 cut(s)	16, 132
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	174, 973
BsaJI	CCNNGG	3 cut(s)	223, 870, 983
BsaWI	WCCGGW	1 cut(s)	672
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 926, 1092
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	3 cut(s)	11, 127, 382
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	223, 870, 983
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	3 cut(s)	190, 926, 1092
BseMII	CTCAG	3 cut(s)	57, 684, 877
BseNI	ACTGG	3 cut(s)	11, 127, 382
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	770
BseYI	CCCAGC	1 cut(s)	1007
BshFI	GGCC	2 cut(s)	222, 246
BshNI	GGYRCC	1 cut(s)	1066
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	3 cut(s)	86, 673, 927
BslI	CCNNNNNNNGG	3 cut(s)	190, 926, 1092
BsmAI	GTCTC	3 cut(s)	84, 174, 973
BsnI	GGCC	2 cut(s)	222, 246
Bso31I	GGTCTC	2 cut(s)	174, 973
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	4 cut(s)	143, 508, 635, 901
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	1 cut(s)	1042
BspANI	GGCC	2 cut(s)	222, 246
BspCNI	CTCAG	3 cut(s)	56, 685, 876
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	3 cut(s)	195, 585, 1068
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	1066
BspTNI	GGTCTC	2 cut(s)	174, 973
BsrFI	RCCGGY	1 cut(s)	926
BsrI	ACTGG	3 cut(s)	11, 127, 382
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	3 cut(s)	223, 870, 983
BssMI	GATC	4 cut(s)	143, 508, 635, 901
BssNAI	GTATAC	2 cut(s)	129, 302
BssT1I	CCWWGG	2 cut(s)	870, 983
Bst1107I	GTATAC	2 cut(s)	129, 302
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	5 cut(s)	62, 136, 215, 743, 784
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	4 cut(s)	43, 693, 814, 863
BstDSI	CCRYGG	1 cut(s)	983
BstEII	GGTNACC	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	4 cut(s)	146, 511, 638, 904
BstMAI	GTCTC	3 cut(s)	84, 174, 973
BstMBI	GATC	4 cut(s)	143, 508, 635, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 810
BstNI	CCWGG	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	85, 223
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	770
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	635
BstZ17I	GTATAC	2 cut(s)	129, 302
BsuI	GTATCC	1 cut(s)	1031
BsuRI	GGCC	2 cut(s)	222, 246
BtgI	CCRYGG	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	6 cut(s)	58, 120, 220, 375, 393, 748
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	4 cut(s)	193, 221, 263, 529
CseI	GACGC	1 cut(s)	450
Csp6I	GTAC	4 cut(s)	211, 867, 1012, 1067
CviAII	CATG	6 cut(s)	330, 597, 905, 939, 984, 1092
CviQI	GTAC	4 cut(s)	211, 867, 1012, 1067
DdeI	CTNAG	4 cut(s)	43, 693, 814, 863
DpnI	GATC	4 cut(s)	145, 510, 637, 903
DpnII	GATC	4 cut(s)	143, 508, 635, 901
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	870, 983
Eco31I	GGTCTC	2 cut(s)	174, 973
Eco47I	GGWCC	3 cut(s)	193, 263, 529
Eco57I	CTGAAG	2 cut(s)	681, 694
Eco91I	GGTNACC	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	870, 983
EcoT22I	ATGCAT	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	870, 983
FaeI	CATG	6 cut(s)	333, 600, 908, 942, 987, 1095
FatI	CATG	6 cut(s)	329, 596, 904, 938, 983, 1091
FauNDI	CATATG	2 cut(s)	826, 1051
FbaI	TGATCA	1 cut(s)	901
FblI	GTMKAC	2 cut(s)	128, 301
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	2 cut(s)	989, 1074
GluI	GCNGC	1 cut(s)	759
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	222, 246
HapII	CCGG	3 cut(s)	86, 673, 927
HgaI	GACGC	1 cut(s)	450
Hin1II	CATG	6 cut(s)	333, 600, 908, 942, 987, 1095
HinfI	GANTC	3 cut(s)	90, 170, 688
HpaII	CCGG	3 cut(s)	86, 673, 927
HphI	GGTGA	3 cut(s)	110, 669, 911
Hpy166II	GTNNAC	8 cut(s)	58, 101, 129, 193, 302, 445, 594, 1014
Hpy188I	TCNGA	7 cut(s)	148, 175, 406, 421, 773, 921, 1030
Hpy188III	TCNNGA	3 cut(s)	581, 692, 905
Hpy8I	GTNNAC	8 cut(s)	58, 101, 129, 193, 302, 445, 594, 1014
HpyAV	CCTTC	4 cut(s)	170, 287, 542, 718
HpyCH4III	ACNGT	5 cut(s)	62, 136, 215, 743, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 810
HpyF3I	CTNAG	4 cut(s)	43, 693, 814, 863
Hsp92II	CATG	6 cut(s)	333, 600, 908, 942, 987, 1095
KpnI	GGTACC	1 cut(s)	1070
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	4 cut(s)	143, 508, 635, 901
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	4 cut(s)	352, 388, 410, 791
MaeI	CTAG	2 cut(s)	989, 1074
MaeIII	GTNAC	2 cut(s)	499, 675
MalI	GATC	4 cut(s)	145, 510, 637, 903
MboI	GATC	4 cut(s)	143, 508, 635, 901
MboII	GAAGA	4 cut(s)	20, 74, 632, 674
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	4 cut(s)	536, 552, 915, 1002
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	125, 257, 290, 427, 520, 680, 690, 854
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	4 cut(s)	138, 555, 765, 969
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	3 cut(s)	86, 673, 927
MspR9I	CCNGG	2 cut(s)	87, 225
MunI	CAATTG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	398, 810
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	983
NdeI	CATATG	2 cut(s)	826, 1051
NdeII	GATC	4 cut(s)	143, 508, 635, 901
NlaIII	CATG	6 cut(s)	333, 600, 908, 942, 987, 1095
NlaIV	GGNNCC	3 cut(s)	195, 585, 1068
NmuCI	GTSAC	1 cut(s)	675
NsiI	ATGCAT	1 cut(s)	403
PagI	TCATGA	1 cut(s)	904
PfeI	GAWTC	2 cut(s)	90, 688
PflFI	GACNNNGTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	1092
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	760
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	529
PsiI	TTATAA	1 cut(s)	914
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	195, 585, 1068
PspPI	GGNCC	4 cut(s)	193, 221, 263, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	635
PsyI	GACNNNGTC	1 cut(s)	460
RsaI	GTAC	4 cut(s)	212, 868, 1013, 1068
RsaNI	GTAC	4 cut(s)	211, 867, 1012, 1067
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	138, 555, 765, 969
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	4 cut(s)	143, 508, 635, 901
Sau96I	GGNCC	4 cut(s)	193, 221, 263, 529
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	87, 225
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	4 cut(s)	352, 388, 410, 791
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	3 cut(s)	193, 263, 529
SmiMI	CAYNNNNRTG	1 cut(s)	328
Sse9I	AATT	4 cut(s)	536, 552, 915, 1002
SsiI	CCGC	1 cut(s)	1042
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	2 cut(s)	989, 1074
StyD4I	CCNGG	2 cut(s)	85, 223
StyI	CCWWGG	2 cut(s)	870, 983
TaaI	ACNGT	5 cut(s)	62, 136, 215, 743, 784
TaqI	TCGA	3 cut(s)	93, 754, 846
TasI	AATT	4 cut(s)	536, 552, 915, 1002
TfiI	GAWTC	2 cut(s)	90, 688
Tru1I	TTAA	4 cut(s)	138, 555, 765, 969
Tru9I	TTAA	4 cut(s)	138, 555, 765, 969
TscAI	CASTG	6 cut(s)	65, 127, 220, 382, 400, 748
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	6 cut(s)	17, 306, 318, 633, 666, 762
TspRI	CASTG	6 cut(s)	65, 127, 220, 382, 400, 748
Tth111I	GACNNNGTC	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	1092
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	193, 263, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmiI	GTMKAC	2 cut(s)	128, 301
XspI	CTAG	2 cut(s)	989, 1074
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.