Rh6DG039400

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002263
Physical Location & Seq
Forward (+)
4250849 .. 4252641
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG039400.1

Sequence Viewer

Length: 834 bp
ATGGCATTTAGTTCAAACAACAAAACCATGAACTGGGTTTGCCTGCATTTGCTTCTTCTACTGATATTCTCAGCAAATGCAGTTCACTGTGGCACATTGGTCAAGTCTCTTCCAGGATTCGATGGTGAACTTCCTTTCAACCTCTACACTGGGTATACGACTGTTAAAGGATCAGAGATGTTTTACTATTTCGTTGAGTCGGAAGGAGACCCCAAAGTAGACCCTTTGTTGCTTTGGTACAGTGGTGGCCCTGGTTGCTCTGCTTTCAATGGCCTCATTTACGAAAATGGTCCTTTGGACTTCAATCTTACAGATTATGAAGGAGGTATACCGAAAACTTATCACTACCCATACTCATGGACAAGGACTGCAAGCATATTGTTTGTGGATGCACCTGTTGGCACTGGTTTTTCCTATGCAACTGATGCATCTGAATATGCTACATCAGATACAAAAACAGCAGAACAGGTTTACGGCTTTTTGACAGCGTGGTTGAATGAGCACCCACAATATTCCAAGCATCAATTATTTGTTGGGGCTGATTCGTATGCAGGAGTATCGGGAACCATTGTTGTTAAACATATAATAGATGGTAATGATGCCAGAGCATCACCACGCCTCAATCTCAAGGGCTATCTTTTAGGGTGTCCGCGAACAGATGCAACCATCAATGAGAATTCAAAGTATATTTATGCTCACCGGATGGGACTTATATCAGATGAACTTTATCAGTCAGCTTTAGAAAGCTGTAATGCAAGTTTCTATGAAGTAACCTCAGATCAACCAGAATGTTATGAGGACCTTCAATTGATTGCAAGGCACAACGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

277

Amino Acids

30.77

Weight (kDa)

4.77

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 271 2.2e-73 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 3 cut(s) 155, 219, 328
AccII CGCG 1 cut(s) 652
AciI CCGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 676
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 7 cut(s) 15, 139, 268, 304, 496, 681, 806
AjnI CCWGG 2 cut(s) 112, 250
AluBI AGCT 2 cut(s) 737, 747
AluI AGCT 2 cut(s) 737, 747
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 111, 201
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 247, 271
ApoI RAATTY 1 cut(s) 676
AspS9I GGNCC 3 cut(s) 248, 290, 799
AsuHPI GGTGA 3 cut(s) 137, 603, 689
AvaII GGWCC 2 cut(s) 290, 799
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
Bbv12I GWGCWC 1 cut(s) 504
BccI CCATC 4 cut(s) 116, 584, 674, 697
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 2 cut(s) 114, 252
BcoDI GTCTC 2 cut(s) 111, 201
Bme1390I CCNGG 2 cut(s) 114, 252
Bme18I GGWCC 2 cut(s) 290, 799
BmgT120I GGNCC 3 cut(s) 248, 290, 799
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 2 cut(s) 114, 252
BmrI ACTGGG 2 cut(s) 43, 159
BmsI GCATC 7 cut(s) 379, 415, 437, 529, 589, 617, 649
BmuI ACTGGG 2 cut(s) 43, 159
BpuEI CTTGAG 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 699
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 3 cut(s) 38, 154, 409
BseBI CCWGG 2 cut(s) 114, 252
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 394, 708
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 84, 789
BseNI ACTGG 3 cut(s) 38, 154, 409
Bsh1236I CGCG 1 cut(s) 652
BshFI GGCC 2 cut(s) 249, 273
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 1 cut(s) 700
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 111, 201
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 2 cut(s) 249, 273
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 170, 778, 826
BspACI CCGC 1 cut(s) 650
BspANI GGCC 2 cut(s) 249, 273
BspCNI CTCAG 2 cut(s) 83, 788
BspFNI CGCG 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 3 cut(s) 38, 154, 409
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 170, 778, 826
BssNAI GTATAC 2 cut(s) 156, 329
Bst1107I GTATAC 2 cut(s) 156, 329
Bst2UI CCWGG 2 cut(s) 114, 252
Bst4CI ACNGT 3 cut(s) 89, 163, 242
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 44, 373
BstDEI CTNAG 2 cut(s) 70, 775
BstF5I GGATG 2 cut(s) 394, 708
BstFNI CGCG 1 cut(s) 652
BstKTI GATC 3 cut(s) 173, 781, 829
BstMAI GTCTC 2 cut(s) 111, 201
BstMBI GATC 3 cut(s) 170, 778, 826
BstMWI GCNNNNNNNGC 2 cut(s) 255, 425
BstNI CCWGG 2 cut(s) 114, 252
BstSCI CCNGG 2 cut(s) 112, 250
BstUI CGCG 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 357
BstZ17I GTATAC 2 cut(s) 156, 329
BsuRI GGCC 2 cut(s) 249, 273
BtsCI GGATG 2 cut(s) 394, 708
BtsIMutI CAGTG 4 cut(s) 85, 147, 247, 402
Cac8I GCNNGC 2 cut(s) 44, 373
Cfr13I GGNCC 3 cut(s) 248, 290, 799
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 28, 357
CviJI RGCY 7 cut(s) 249, 273, 477, 539, 633, 737, 747
CviKI_1 RGCY 7 cut(s) 249, 273, 477, 539, 633, 737, 747
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 70, 775
DpnI GATC 3 cut(s) 172, 780, 828
DpnII GATC 3 cut(s) 170, 778, 826
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 290, 799
EcoO109I RGGNCCY 1 cut(s) 799
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 112, 250
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 2 cut(s) 31, 360
FaqI GGGAC 1 cut(s) 720
FatI CATG 2 cut(s) 27, 356
FblI GTMKAC 3 cut(s) 155, 219, 328
FokI GGATG 2 cut(s) 401, 715
HaeIII GGCC 2 cut(s) 249, 273
HapII CCGG 1 cut(s) 700
Hin1II CATG 2 cut(s) 31, 360
HinfI GANTC 3 cut(s) 117, 197, 542
HpaII CCGG 1 cut(s) 700
HphI GGTGA 3 cut(s) 137, 603, 689
Hpy166II GTNNAC 6 cut(s) 85, 128, 156, 220, 329, 472
Hpy188I TCNGA 6 cut(s) 175, 202, 433, 448, 718, 778
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 6 cut(s) 85, 128, 156, 220, 329, 472
HpyAV CCTTC 3 cut(s) 197, 314, 812
HpyCH4III ACNGT 3 cut(s) 89, 163, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 425
HpyF3I CTNAG 2 cut(s) 70, 775
Hsp92II CATG 2 cut(s) 31, 360
Kzo9I GATC 3 cut(s) 170, 778, 826
LweI GCATC 7 cut(s) 379, 415, 437, 529, 589, 617, 649
MaeIII GTNAC 1 cut(s) 769
MalI GATC 3 cut(s) 172, 780, 828
MboI GATC 3 cut(s) 170, 778, 826
MboII GAAGA 2 cut(s) 47, 101
MfeI CAATTG 1 cut(s) 806
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 3 cut(s) 524, 676, 806
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 152, 284, 317, 629, 784, 790
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 3 cut(s) 165, 576, 832
MslI CAYNNNNRTG 1 cut(s) 355
MspI CCGG 1 cut(s) 700
MspR9I CCNGG 2 cut(s) 114, 252
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 2 cut(s) 114, 252
MvnI CGCG 1 cut(s) 652
MwoI GCNNNNNNNGC 2 cut(s) 255, 425
NdeII GATC 3 cut(s) 170, 778, 826
NlaIII CATG 2 cut(s) 31, 360
NlaIV GGNNCC 1 cut(s) 565
NsiI ATGCAT 1 cut(s) 430
PfeI GAWTC 2 cut(s) 117, 542
PflMI CCANNNNNTGG 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 112
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 112, 250
PspGI CCWGG 2 cut(s) 112, 250
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 3 cut(s) 248, 290, 799
PspPPI RGGWCCY 1 cut(s) 799
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 3 cut(s) 165, 576, 832
Sau3AI GATC 3 cut(s) 170, 778, 826
Sau96I GGNCC 3 cut(s) 248, 290, 799
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 114, 252
SduI GDGCHC 1 cut(s) 504
SetI ASST 8 cut(s) 144, 328, 397, 471, 739, 749, 776, 804
SfaNI GCATC 7 cut(s) 379, 415, 437, 529, 589, 617, 649
SinI GGWCC 2 cut(s) 290, 799
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 3 cut(s) 524, 676, 806
SsiI CCGC 1 cut(s) 650
SspI AATATT 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 112, 250
TaaI ACNGT 3 cut(s) 89, 163, 242
TaqI TCGA 1 cut(s) 120
TasI AATT 3 cut(s) 524, 676, 806
TfiI GAWTC 2 cut(s) 117, 542
Tru1I TTAA 3 cut(s) 165, 576, 832
Tru9I TTAA 3 cut(s) 165, 576, 832
TscAI CASTG 4 cut(s) 92, 154, 247, 409
TspDTI ATGAA 4 cut(s) 44, 333, 735, 780
TspRI CASTG 4 cut(s) 92, 154, 247, 409
Van91I CCANNNNNTGG 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 290, 799
XapI RAATTY 1 cut(s) 676
XmiI GTMKAC 3 cut(s) 155, 219, 328
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.