RchiOBHm_Chr6g0248981

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002263
Physical Location & Seq
Forward (+)
4839304 .. 4842536
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22319

Sequence Viewer

Length: 1419 bp
ATGGCATTTAGTTCAAACAACAAAACCATGAACTGGGTTTGTCTGCATTTGCTTCTTCTACTGATATTCTCAGCAAATGCAGTTCACTGTGGCACATTGGTCAAGTCTCTTCCGGGGTTCGATGGTGAACTTCCTTTCAACCTCTACACTGGGTATACGACTGTTAAAGGATCAGAGATGTTTTACTACTTCGTTGAGTCGGAAGGAGACCCCAAAGTGGACCCTTTGTTGCTTTGGTACAGTGGTGGCCCTGGTTGTTCTGCTTTCAATGGCCTCATTTACGAAAATGGTCCTTTGGATTTCAATCTTACAGATTATGAAGGAGGTATACCGAAAACTTATCACTACCCATATTCATGGACAAGGACTGCAAGCATATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCCACTGATGCATCAGAATATGCTACCTCCGATACAAAAACAGCAGAGCAGGTTTACGGCTTTTTGACAGCGTGGTTGAATGAGCACCCGCAATATTCCAAGCTTCAATTATTTGTTGGAGCTGATTCATATGCAGGAGTATCGGGAACCATTGTTGTTAAACATATAATAGATGGTAATGATGCTGGAGCATCACCACGCCTCAATCTCAAGGGCTATCTTTTAGGGTGTCCACGTACAGATGCAACCATCAATGAGAATTCAAAATATATTTATGCTCACCGGATGGGACTTATATCAGATGACCTTTATCATTCTGCTTTAGAAAGCTGTAATGCAAGTTTCTATGGAGTAACCACAGATCAACCAGAATGTTATGAGGACCTTCAATTGATTGCAAGGCAAATTAAAGACATAAACAAAAACAATATTCTGGAGCCAAAGTGCACATGGGCTTCGCCAATAAACGATGAAGAACCAGCTCGTAGATCTATGCAGGAAAATGAATACCCTGAAGACTACCTCCGGTCACCTCTACAGAATCCTGAGTTCTGTCATACCTTCAGCTATTCTTTATCTTATGTTTGGGCGAACAGTGATGAAGTTCGAGCAGCACTTAATATCAGAAATGGAACAGTATTTGATTGGAAGAGATGCAATAAGAGCTTAGATTACACATATGATGTGGCAAGTGTCCTCGAATATCATCAAAATCTCAGTACCAAGGGATTACAAGTTCTGATATTCAATGGTGATCATGACCTTATAATTCCGAACACCGGCACAGAAGCATGGATAAAAAAGTTGGGTTTGACTATTGTTAATGATTGGAGACCATGGCTAGTTGATGGTCAAATTGCTGGGTACACCATCAAGTATTCAGAAAATGGATACCGCTTGACATATGCAACCCTAAAGGGAGCAGGTCACTCACCTCAAGAATACAAACGTAGGGAAGGGTATAAAATGTTTGATAGATTCATCCATTACTATCCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

472

Amino Acids

53.39

Weight (kDa)

5.2

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 468 5.4e-112 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1184
Acc36I ACCTGC 2 cut(s) 457, 1331
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 2 cut(s) 155, 328
AciI CCGC 2 cut(s) 506, 1312
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 2 cut(s) 951, 964
AfaI GTAC 4 cut(s) 239, 655, 1138, 1283
AfiI CCNNNNNNNGG 3 cut(s) 33, 217, 1196
AgsI TTSAA 9 cut(s) 15, 139, 268, 304, 496, 524, 681, 806, 1165
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 1137, 1169
AluBI AGCT 6 cut(s) 520, 539, 747, 899, 984, 1083
AluI AGCT 6 cut(s) 520, 539, 747, 899, 984, 1083
Alw21I GWGCWC 2 cut(s) 504, 866
Alw26I GTCTC 3 cut(s) 111, 201, 1243
Alw44I GTGCAC 1 cut(s) 862
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 247, 271
ApaLI GTGCAC 1 cut(s) 862
ApeKI GCWGC 1 cut(s) 1028
ApoI RAATTY 1 cut(s) 676
AspS9I GGNCC 4 cut(s) 220, 248, 290, 799
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 6 cut(s) 137, 603, 689, 939, 1181, 1341
AvaII GGWCC 3 cut(s) 220, 290, 799
BaeGI GKGCMC 1 cut(s) 866
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 1 cut(s) 939
Bbv12I GWGCWC 2 cut(s) 504, 866
BbvI GCAGC 1 cut(s) 1040
BccI CCATC 6 cut(s) 116, 584, 674, 697, 1259, 1295
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 1301
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 111, 201, 1243
BfaI CTAG 1 cut(s) 1259
BfmI CTRYAG 1 cut(s) 953
BfuAI ACCTGC 2 cut(s) 457, 1331
BfuI GTATCC 1 cut(s) 1301
BglII AGATCT 1 cut(s) 905
BisI GCNGC 1 cut(s) 1029
BlsI GCNGC 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 114, 252
Bme18I GGWCC 3 cut(s) 220, 290, 799
BmgT120I GGNCC 4 cut(s) 220, 248, 290, 799
BmiI GGNNCC 3 cut(s) 222, 565, 855
BmrFI CCNGG 2 cut(s) 114, 252
BmrI ACTGGG 2 cut(s) 43, 159
BmsI GCATC 7 cut(s) 379, 415, 437, 589, 617, 649, 1061
BmuI ACTGGG 2 cut(s) 43, 159
BpiI GAAGAC 1 cut(s) 939
BpmI CTGGAG 2 cut(s) 624, 872
BpuEI CTTGAG 2 cut(s) 611, 1338
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 2 cut(s) 201, 1243
BsaJI CCNNGG 4 cut(s) 113, 250, 1140, 1253
BsaWI WCCGGW 2 cut(s) 699, 942
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 217, 1196
Bse118I RCCGGY 1 cut(s) 1196
Bse1I ACTGG 3 cut(s) 38, 154, 409
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 113, 250, 1140, 1253
BseGI GGATG 3 cut(s) 394, 708, 1398
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 33, 217, 1196
BseMII CTCAG 3 cut(s) 84, 954, 1147
BseNI ACTGG 3 cut(s) 38, 154, 409
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 1 cut(s) 1040
BseYI CCCAGC 1 cut(s) 1277
BshFI GGCC 2 cut(s) 249, 273
BsiHKAI GWGCWC 2 cut(s) 504, 866
BsiSI CCGG 4 cut(s) 113, 700, 943, 1197
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 3 cut(s) 33, 217, 1196
BsmAI GTCTC 3 cut(s) 111, 201, 1243
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 2 cut(s) 249, 273
Bso31I GGTCTC 2 cut(s) 201, 1243
Bsp1286I GDGCHC 2 cut(s) 504, 866
Bsp143I GATC 4 cut(s) 170, 778, 905, 1171
Bsp19I CCATGG 1 cut(s) 1253
BspACI CCGC 2 cut(s) 506, 1312
BspANI GGCC 2 cut(s) 249, 273
BspCNI CTCAG 3 cut(s) 83, 955, 1146
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 3 cut(s) 222, 565, 855
BspMI ACCTGC 2 cut(s) 457, 1331
BspPI GGATC 1 cut(s) 178
BspTNI GGTCTC 2 cut(s) 201, 1243
BsrFI RCCGGY 1 cut(s) 1196
BsrI ACTGG 3 cut(s) 38, 154, 409
BssAI RCCGGY 1 cut(s) 1196
BssECI CCNNGG 4 cut(s) 113, 250, 1140, 1253
BssMI GATC 4 cut(s) 170, 778, 905, 1171
BssNAI GTATAC 2 cut(s) 156, 329
BssT1I CCWWGG 2 cut(s) 1140, 1253
Bst1107I GTATAC 2 cut(s) 156, 329
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 5 cut(s) 89, 163, 242, 1013, 1054
Bst6I CTCTTC 2 cut(s) 114, 1061
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 70, 963, 1084, 1133
BstDSI CCRYGG 1 cut(s) 1253
BstEII GGTNACC 1 cut(s) 945
BstF5I GGATG 3 cut(s) 394, 708, 1398
BstKTI GATC 4 cut(s) 173, 781, 908, 1174
BstMAI GTCTC 3 cut(s) 111, 201, 1243
BstMBI GATC 4 cut(s) 170, 778, 905, 1171
BstMWI GCNNNNNNNGC 2 cut(s) 425, 1080
BstNI CCWGG 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 945
BstSCI CCNGG 2 cut(s) 112, 250
BstSFI CTRYAG 1 cut(s) 953
BstSLI GKGCMC 1 cut(s) 866
BstV1I GCAGC 1 cut(s) 1040
BstV2I GAAGAC 1 cut(s) 939
BstX2I RGATCY 1 cut(s) 905
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 905
BstZ17I GTATAC 2 cut(s) 156, 329
BsuI GTATCC 1 cut(s) 1301
BsuRI GGCC 2 cut(s) 249, 273
BtgI CCRYGG 1 cut(s) 1253
BtsCI GGATG 3 cut(s) 394, 708, 1398
BtsIMutI CAGTG 6 cut(s) 85, 147, 247, 402, 420, 1018
BveI ACCTGC 2 cut(s) 457, 1331
Cac8I GCNNGC 1 cut(s) 373
CciI TCATGA 1 cut(s) 1174
Cfr10I RCCGGY 1 cut(s) 1196
Cfr13I GGNCC 4 cut(s) 220, 248, 290, 799
Csp6I GTAC 4 cut(s) 238, 654, 1137, 1282
CviAII CATG 6 cut(s) 28, 357, 867, 1175, 1209, 1254
CviQI GTAC 4 cut(s) 238, 654, 1137, 1282
DdeI CTNAG 4 cut(s) 70, 963, 1084, 1133
DpnI GATC 4 cut(s) 172, 780, 907, 1173
DpnII GATC 4 cut(s) 170, 778, 905, 1171
Eam1104I CTCTTC 2 cut(s) 114, 1061
EarI CTCTTC 2 cut(s) 114, 1061
Eco130I CCWWGG 2 cut(s) 1140, 1253
Eco31I GGTCTC 2 cut(s) 201, 1243
Eco47I GGWCC 3 cut(s) 220, 290, 799
Eco57I CTGAAG 2 cut(s) 951, 964
Eco91I GGTNACC 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 945
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 1140, 1253
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 1140, 1253
FaeI CATG 6 cut(s) 31, 360, 870, 1178, 1212, 1257
FaqI GGGAC 1 cut(s) 720
FatI CATG 6 cut(s) 27, 356, 866, 1174, 1208, 1253
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 3 cut(s) 547, 1096, 1321
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 2 cut(s) 155, 328
Fnu4HI GCNGC 1 cut(s) 1029
FokI GGATG 3 cut(s) 401, 715, 1385
Fsp4HI GCNGC 1 cut(s) 1029
FspBI CTAG 1 cut(s) 1259
GluI GCNGC 1 cut(s) 1029
GsaI CCCAGC 1 cut(s) 1281
GsuI CTGGAG 2 cut(s) 624, 872
HaeIII GGCC 2 cut(s) 249, 273
HapII CCGG 4 cut(s) 113, 700, 943, 1197
Hin1II CATG 6 cut(s) 31, 360, 870, 1178, 1212, 1257
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 4 cut(s) 197, 542, 958, 1395
HpaII CCGG 4 cut(s) 113, 700, 943, 1197
HphI GGTGA 6 cut(s) 137, 603, 689, 939, 1181, 1341
Hpy166II GTNNAC 9 cut(s) 85, 128, 156, 220, 329, 472, 650, 864, 1284
Hpy188I TCNGA 9 cut(s) 175, 202, 433, 448, 718, 1043, 1158, 1191, 1300
Hpy188III TCNNGA 5 cut(s) 561, 851, 962, 1175, 1355
Hpy8I GTNNAC 9 cut(s) 85, 128, 156, 220, 329, 472, 650, 864, 1284
HpyAV CCTTC 5 cut(s) 197, 314, 812, 988, 1367
HpyCH4III ACNGT 5 cut(s) 89, 163, 242, 1013, 1054
HpyCH4IV ACGT 2 cut(s) 652, 1366
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 1080
HpyF3I CTNAG 4 cut(s) 70, 963, 1084, 1133
HpySE526I ACGT 2 cut(s) 652, 1366
Hsp92II CATG 6 cut(s) 31, 360, 870, 1178, 1212, 1257
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 4 cut(s) 170, 778, 905, 1171
LmnI GCTCC 4 cut(s) 536, 605, 853, 1337
Lsp1109I GCAGC 1 cut(s) 1040
LweI GCATC 7 cut(s) 379, 415, 437, 589, 617, 649, 1061
MaeI CTAG 1 cut(s) 1259
MaeII ACGT 2 cut(s) 652, 1366
MaeIII GTNAC 3 cut(s) 769, 945, 1343
MalI GATC 4 cut(s) 172, 780, 907, 1173
MboI GATC 4 cut(s) 170, 778, 905, 1171
MboII GAAGA 5 cut(s) 47, 101, 902, 944, 1078
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 1 cut(s) 905
MhlI GDGCHC 2 cut(s) 504, 866
MluCI AATT 6 cut(s) 524, 676, 806, 822, 1185, 1272
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 180, 514
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 5 cut(s) 165, 576, 825, 1035, 1239
MslI CAYNNNNRTG 1 cut(s) 355
MspI CCGG 4 cut(s) 113, 700, 943, 1197
MspR9I CCNGG 2 cut(s) 114, 252
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 425, 1080
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 1253
NdeI CATATG 3 cut(s) 547, 1096, 1321
NdeII GATC 4 cut(s) 170, 778, 905, 1171
NlaIII CATG 6 cut(s) 31, 360, 870, 1178, 1212, 1257
NlaIV GGNNCC 3 cut(s) 222, 565, 855
NmuCI GTSAC 2 cut(s) 945, 1343
NsiI ATGCAT 1 cut(s) 430
PagI TCATGA 1 cut(s) 1174
PfeI GAWTC 3 cut(s) 542, 958, 1395
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 1 cut(s) 1030
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 799
PsiI TTATAA 1 cut(s) 1184
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 945
PspFI CCCAGC 1 cut(s) 1277
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 222, 565, 855
PspPI GGNCC 4 cut(s) 220, 248, 290, 799
PspPPI RGGWCCY 1 cut(s) 799
PsuI RGATCY 1 cut(s) 905
RsaI GTAC 4 cut(s) 239, 655, 1138, 1283
RsaNI GTAC 4 cut(s) 238, 654, 1137, 1282
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 5 cut(s) 165, 576, 825, 1035, 1239
SatI GCNGC 1 cut(s) 1029
Sau3AI GATC 4 cut(s) 170, 778, 905, 1171
Sau96I GGNCC 4 cut(s) 220, 248, 290, 799
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 114, 252
SduI GDGCHC 2 cut(s) 504, 866
SfaNI GCATC 7 cut(s) 379, 415, 437, 589, 617, 649, 1061
SfcI CTRYAG 1 cut(s) 953
SinI GGWCC 3 cut(s) 220, 290, 799
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 2 cut(s) 626, 1353
SmoI CTYRAG 2 cut(s) 626, 1353
Sse9I AATT 6 cut(s) 524, 676, 806, 822, 1185, 1272
SsiI CCGC 2 cut(s) 506, 1312
SspI AATATT 2 cut(s) 512, 847
SspMI CTAG 1 cut(s) 1259
StyD4I CCNGG 2 cut(s) 112, 250
StyI CCWWGG 2 cut(s) 1140, 1253
TaaI ACNGT 5 cut(s) 89, 163, 242, 1013, 1054
TaiI ACGT 2 cut(s) 655, 1369
TaqI TCGA 3 cut(s) 120, 1024, 1116
TasI AATT 6 cut(s) 524, 676, 806, 822, 1185, 1272
TfiI GAWTC 3 cut(s) 542, 958, 1395
Tru1I TTAA 5 cut(s) 165, 576, 825, 1035, 1239
Tru9I TTAA 5 cut(s) 165, 576, 825, 1035, 1239
TscAI CASTG 6 cut(s) 92, 154, 247, 409, 427, 1018
TseFI GTSAC 2 cut(s) 945, 1343
TseI GCWGC 1 cut(s) 1028
Tsp45I GTSAC 2 cut(s) 945, 1343
TspDTI ATGAA 8 cut(s) 44, 333, 345, 534, 903, 936, 1032, 1387
TspRI CASTG 6 cut(s) 92, 154, 247, 409, 427, 1018
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 862
VpaK11BI GGWCC 3 cut(s) 220, 290, 799
XapI RAATTY 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmiI GTMKAC 2 cut(s) 155, 328
XspI CTAG 1 cut(s) 1259
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.