Rmu_co8226213.1_g000001

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8226213.1
OG0002263
Physical Location & Seq
Forward (+)
171 .. 749
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8226213.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atgaactgggtttgtttgcatttgcttctgctacttattttctcggccaatgcagtttactgtggcacactggtcaagtctattcccgggttcgatggtgaacttcctttcaagctctacactgggtatacgactgttaatggctcagagatgttttactacttcattgagtcagaaggaacccccaaagaagaccctttgttgctgtggtacagtggaggccctggttgttcagctttcaatggtctcatttacgaaaacggtcccttggctttcaacgacacagattatgaaggcggtgtaccaaaaacattttactatccatactcatggtcaagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

4.41

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AciI CCGC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 2 cut(s) 212, 303
AgsI TTSAA 3 cut(s) 112, 241, 277
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 115, 236
AluI AGCT 2 cut(s) 115, 236
Alw26I GTCTC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 2 cut(s) 45, 220
AspS9I GGNCC 2 cut(s) 221, 263
AsuC2I CCSGG 2 cut(s) 87, 88
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 2 cut(s) 87, 88
BcoDI GTCTC 1 cut(s) 251
Bme1390I CCNGG 3 cut(s) 87, 88, 225
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 221, 263
BmiI GGNNCC 2 cut(s) 181, 265
BmrFI CCNGG 3 cut(s) 87, 88, 225
BmrI ACTGGG 2 cut(s) 16, 132
BmuI ACTGGG 2 cut(s) 16, 132
BpiI GAAGAC 1 cut(s) 198
BpuMI CCSGG 2 cut(s) 87, 88
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 86, 223, 267
Bse1I ACTGG 3 cut(s) 11, 75, 127
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 86, 223, 267
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 11, 75, 127
BshFI GGCC 2 cut(s) 47, 222
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 47, 222
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 86
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 47, 222
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 181, 265
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 3 cut(s) 11, 75, 127
BssECI CCNNGG 3 cut(s) 86, 223, 267
BssNAI GTATAC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 4 cut(s) 62, 136, 215, 263
BstDEI CTNAG 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 3 cut(s) 85, 86, 223
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 330
BstZ17I GTATAC 1 cut(s) 129
BsuRI GGCC 2 cut(s) 47, 222
BtsIMutI CAGTG 3 cut(s) 68, 120, 220
Cfr13I GGNCC 2 cut(s) 221, 263
Cfr9I CCCGGG 1 cut(s) 86
Csp6I GTAC 2 cut(s) 211, 302
CviAII CATG 1 cut(s) 330
CviJI RGCY 6 cut(s) 47, 115, 144, 222, 236, 272
CviKI_1 RGCY 6 cut(s) 47, 115, 144, 222, 236, 272
CviQI GTAC 2 cut(s) 211, 302
DdeI CTNAG 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 333
FaiI YATR 4 cut(s) 129, 291, 325, 331
FaqI GGGAC 1 cut(s) 249
FatI CATG 1 cut(s) 329
FblI GTMKAC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 47, 222
HapII CCGG 1 cut(s) 87
Hin1II CATG 1 cut(s) 333
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 4 cut(s) 58, 101, 129, 302
Hpy188I TCNGA 2 cut(s) 148, 175
Hpy8I GTNNAC 4 cut(s) 58, 101, 129, 302
HpyAV CCTTC 2 cut(s) 170, 287
HpyCH4III ACNGT 4 cut(s) 62, 136, 215, 263
HpyCH4V TGCA 2 cut(s) 19, 53
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 1 cut(s) 333
LpnPI CCDG 5 cut(s) 56, 100, 108, 210, 237
MboII GAAGA 1 cut(s) 203
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 1 cut(s) 212
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 328
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 3 cut(s) 87, 88, 225
MvaI CCWGG 1 cut(s) 225
NciI CCSGG 2 cut(s) 87, 88
NlaIII CATG 1 cut(s) 333
NlaIV GGNNCC 2 cut(s) 181, 265
NmeAIII GCCGAG 1 cut(s) 23
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 181, 265
PspPI GGNCC 2 cut(s) 221, 263
RsaI GTAC 2 cut(s) 212, 303
RsaNI GTAC 2 cut(s) 211, 302
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 221, 263
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 87, 88, 225
SetI ASST 2 cut(s) 117, 238
SinI GGWCC 1 cut(s) 263
SmaI CCCGGG 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 328
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 85, 86, 223
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 4 cut(s) 62, 136, 215, 263
TaqI TCGA 1 cut(s) 93
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 3 cut(s) 75, 127, 220
TspDTI ATGAA 3 cut(s) 17, 154, 306
TspMI CCCGGG 1 cut(s) 86
TspRI CASTG 3 cut(s) 75, 127, 220
VpaK11BI GGWCC 1 cut(s) 263
XmaI CCCGGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.