Rh6CG044100

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002263
Physical Location & Seq
Forward (+)
4326600 .. 4329965
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG044100.1

Sequence Viewer

Length: 1170 bp
ATGGTATTTGGTTCTTGCAACAAAACCATGAACTGGGTTTGTTTGCATTTGCTTCTGCTACTTATTTTCTCGGCCAATGCAGTTTACTGTGGCACACTGGTCAAGTCTATTCCCGGGTTCGACGGTGAACTTCCTTTCAAGCTCTACACTGGGTATACGACTGTTAATGGCTCAGAGATGTTTTACTACTTCATCGAGTCGGAAGGAAACCCCAAAGAAGACCCTTTGTTGCTGTGGTACAGTGGAGGCCCTGGTTGTTCTGCTTTCAATGGTCTCATTTACGAAAACGGTCCCTTGGCTTTCAACGACACAGATTATGAAGGAGGTGTACCAAAAACATATTACTATCCATACTCATGGTCAAGGACTGCAAGCCTATTGTTTGTGGATGCACCTGTTGGCACTGGTTTCTCCTATGCAACTGATGCATCAGAATATGCTACCTCCGATACAAAAACAGCAGCACAGGTTTACCAGTTCTTGAGAACGTGGTTGAATGAGCACCCGCAATACCTCAAGGTTCAGTTGTTTGTTGGAGCTGATTCGTATTCAGGCGTATCGGGAACCATTGTTGTTGAACATATAATAGCTGGTAATGATGCCGGATTTAAGCCACGCCTGAATCTCAAGGGCTATATTCTAGGGTGTCCAAAAACAGATGCAACTATCAATGAGAATTCTAAGTACTCCTATTCTCACCGGATGGCACTTATATCAGATGAACTCTATTATTCGGCTAAAAACAGCTGTAATTCAGATTTCTATGGAGCATCTGTTGATGAACCAGAATGTTACGAGGATATTCAATTGATTGCAAGGCAAATTAAAGACATAAACAAAAACCATATTCTGGAGCCAAAATGCACATGGGCTTCACCAGTACCCGATGGAGATTCAGCTCGTAGATCTATGCAGGAATACGAATACCCCGAAGACTTCCTCCGGTCACCTCTAAAAAATCCTGAATTCTGTCACAACTTTAACTATGCGCTATCCTACGTATGGGCAAACGATGATGATGTACGAGTGGCACTTAATATCAGAAATGGAACAGTATTTGATTGGAAGAGATGCAATAAGAGCTTGGATTACACATATGATGTGACCAGTGTCCTTGAATATCATCTAAATCTCAGTACCAAGGGACTACAAGTTCTGATATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

389

Amino Acids

43.95

Weight (kDa)

4.96

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 389 4.7e-83 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 33, 850
AccI GTMKAC 1 cut(s) 155
AciI CCGC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 2 cut(s) 676, 965
AfaI GTAC 6 cut(s) 239, 330, 686, 882, 1023, 1138
AfiI CCNNNNNNNGG 3 cut(s) 33, 850, 1002
AgsI TTSAA 8 cut(s) 139, 268, 304, 496, 578, 806, 1118, 1165
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 1137, 1169
AluBI AGCT 6 cut(s) 142, 539, 590, 747, 899, 1083
AluI AGCT 6 cut(s) 142, 539, 590, 747, 899, 1083
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 2 cut(s) 72, 247
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 676, 965
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 2 cut(s) 248, 290
AsuC2I CCSGG 2 cut(s) 114, 115
AsuHPI GGTGA 4 cut(s) 137, 689, 867, 939
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 2 cut(s) 225, 939
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 473
BccI CCATC 2 cut(s) 697, 881
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 114, 115
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 641
BglII AGATCT 1 cut(s) 905
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 3 cut(s) 114, 115, 252
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 248, 290
BmiI GGNNCC 3 cut(s) 292, 565, 855
BmrFI CCNGG 3 cut(s) 114, 115, 252
BmrI ACTGGG 2 cut(s) 43, 159
BmsI GCATC 7 cut(s) 379, 415, 437, 589, 649, 779, 1061
BmuI ACTGGG 2 cut(s) 43, 159
BoxI GACNNNNGTC 1 cut(s) 1109
BpiI GAAGAC 2 cut(s) 225, 939
BpmI CTGGAG 1 cut(s) 872
BpuEI CTTGAG 3 cut(s) 500, 502, 611
BpuMI CCSGG 2 cut(s) 114, 115
BsaAI YACGTR 1 cut(s) 1000
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 113, 250, 294, 1140
BsaWI WCCGGW 2 cut(s) 699, 942
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 850, 1002
Bse1I ACTGG 7 cut(s) 38, 102, 154, 409, 475, 878, 1107
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 113, 250, 294, 1140
BseGI GGATG 2 cut(s) 394, 708
BseLI CCNNNNNNNGG 3 cut(s) 33, 850, 1002
BseMII CTCAG 2 cut(s) 186, 1147
BseNI ACTGG 7 cut(s) 38, 102, 154, 409, 475, 878, 1107
BseXI GCAGC 1 cut(s) 473
BshFI GGCC 2 cut(s) 74, 249
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 4 cut(s) 114, 603, 700, 943
BslFI GGGAC 2 cut(s) 276, 1158
BslI CCNNNNNNNGG 3 cut(s) 33, 850, 1002
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 276, 1158
BsnI GGCC 2 cut(s) 74, 249
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 1 cut(s) 905
BspACI CCGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 74, 249
BspCNI CTCAG 2 cut(s) 185, 1146
BspLI GGNNCC 3 cut(s) 292, 565, 855
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 7 cut(s) 38, 102, 154, 409, 475, 878, 1107
BssECI CCNNGG 4 cut(s) 113, 250, 294, 1140
BssMI GATC 1 cut(s) 905
BssNAI GTATAC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 294, 1140
Bst1107I GTATAC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 6 cut(s) 89, 125, 163, 242, 290, 1054
Bst6I CTCTTC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 1000
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 172, 681, 1133
BstEII GGTNACC 1 cut(s) 945
BstF5I GGATG 2 cut(s) 394, 708
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 1 cut(s) 908
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 905
BstMWI GCNNNNNNNGC 2 cut(s) 425, 1080
BstNI CCWGG 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 1109
BstPI GGTNACC 1 cut(s) 945
BstSCI CCNGG 3 cut(s) 112, 113, 250
BstSNI TACGTA 1 cut(s) 1000
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 2 cut(s) 225, 939
BstX2I RGATCY 1 cut(s) 905
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 905
BstZ17I GTATAC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 74, 249
BtsCI GGATG 2 cut(s) 394, 708
BtsIMutI CAGTG 5 cut(s) 95, 147, 247, 402, 1114
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 2 cut(s) 248, 290
Cfr9I CCCGGG 1 cut(s) 113
Csp6I GTAC 6 cut(s) 238, 329, 685, 881, 1022, 1137
CviAII CATG 3 cut(s) 28, 357, 867
CviQI GTAC 6 cut(s) 238, 329, 685, 881, 1022, 1137
DdeI CTNAG 3 cut(s) 172, 681, 1133
DpnI GATC 1 cut(s) 907
DpnII GATC 1 cut(s) 905
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 1061
EarI CTCTTC 1 cut(s) 1061
Eco105I TACGTA 1 cut(s) 1000
Eco130I CCWWGG 2 cut(s) 294, 1140
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 945
EcoRI GAATTC 2 cut(s) 676, 965
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 294, 1140
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 294, 1140
FaeI CATG 3 cut(s) 31, 360, 870
FaqI GGGAC 2 cut(s) 276, 1158
FatI CATG 3 cut(s) 27, 356, 866
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 1096
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 401, 715
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 641
GlaI GCGC 1 cut(s) 990
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 872
HaeIII GGCC 2 cut(s) 74, 249
HapII CCGG 4 cut(s) 114, 603, 700, 943
HhaI GCGC 1 cut(s) 991
Hin1II CATG 3 cut(s) 31, 360, 870
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HinfI GANTC 4 cut(s) 197, 542, 622, 893
HpaII CCGG 4 cut(s) 114, 603, 700, 943
HphI GGTGA 4 cut(s) 137, 689, 867, 939
Hpy166II GTNNAC 5 cut(s) 85, 128, 156, 329, 472
Hpy188I TCNGA 8 cut(s) 175, 202, 433, 448, 718, 757, 1043, 1158
Hpy188III TCNNGA 4 cut(s) 481, 561, 851, 962
Hpy8I GTNNAC 5 cut(s) 85, 128, 156, 329, 472
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 197, 314
HpyCH4III ACNGT 6 cut(s) 89, 125, 163, 242, 290, 1054
HpyCH4IV ACGT 2 cut(s) 488, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 1080
HpyF3I CTNAG 3 cut(s) 172, 681, 1133
HpySE526I ACGT 2 cut(s) 488, 999
Hsp92II CATG 3 cut(s) 31, 360, 870
HspAI GCGC 1 cut(s) 989
Kzo9I GATC 1 cut(s) 905
LmnI GCTCC 3 cut(s) 536, 767, 853
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 7 cut(s) 379, 415, 437, 589, 649, 779, 1061
MaeI CTAG 1 cut(s) 641
MaeII ACGT 2 cut(s) 488, 999
MaeIII GTNAC 4 cut(s) 791, 945, 971, 1102
MalI GATC 1 cut(s) 907
MboI GATC 1 cut(s) 905
MboII GAAGA 3 cut(s) 230, 944, 1078
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 1 cut(s) 905
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 5 cut(s) 676, 751, 806, 822, 965
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 180, 514
MnlI CCTC 7 cut(s) 239, 317, 454, 524, 790, 950, 960
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 5 cut(s) 165, 609, 825, 981, 1035
MslI CAYNNNNRTG 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 747
MspI CCGG 4 cut(s) 114, 603, 700, 943
MspR9I CCNGG 3 cut(s) 114, 115, 252
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 425, 1080
NciI CCSGG 2 cut(s) 114, 115
NdeI CATATG 1 cut(s) 1096
NdeII GATC 1 cut(s) 905
NlaIII CATG 3 cut(s) 31, 360, 870
NlaIV GGNNCC 3 cut(s) 292, 565, 855
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 3 cut(s) 945, 971, 1102
NsiI ATGCAT 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PfeI GAWTC 3 cut(s) 542, 622, 893
PflMI CCANNNNNTGG 2 cut(s) 33, 850
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 1000
PshAI GACNNNNGTC 1 cut(s) 1109
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 945
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 292, 565, 855
PspPI GGNCC 2 cut(s) 248, 290
PsuI RGATCY 1 cut(s) 905
PvuII CAGCTG 1 cut(s) 747
RsaI GTAC 6 cut(s) 239, 330, 686, 882, 1023, 1138
RsaNI GTAC 6 cut(s) 238, 329, 685, 881, 1022, 1137
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 5 cut(s) 165, 609, 825, 981, 1035
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 1 cut(s) 905
Sau96I GGNCC 2 cut(s) 248, 290
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 3 cut(s) 114, 115, 252
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 7 cut(s) 379, 415, 437, 589, 649, 779, 1061
SinI GGWCC 1 cut(s) 290
SmaI CCCGGG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 3 cut(s) 481, 515, 626
SmoI CTYRAG 3 cut(s) 481, 515, 626
SnaBI TACGTA 1 cut(s) 1000
Sse9I AATT 5 cut(s) 676, 751, 806, 822, 965
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 3 cut(s) 112, 113, 250
StyI CCWWGG 2 cut(s) 294, 1140
TaaI ACNGT 6 cut(s) 89, 125, 163, 242, 290, 1054
TaiI ACGT 2 cut(s) 491, 1002
TaqI TCGA 2 cut(s) 120, 195
TasI AATT 5 cut(s) 676, 751, 806, 822, 965
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 3 cut(s) 542, 622, 893
Tru1I TTAA 5 cut(s) 165, 609, 825, 981, 1035
Tru9I TTAA 5 cut(s) 165, 609, 825, 981, 1035
TscAI CASTG 5 cut(s) 102, 154, 247, 409, 1114
TseFI GTSAC 3 cut(s) 945, 971, 1102
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 945, 971, 1102
TspDTI ATGAA 5 cut(s) 44, 181, 333, 735, 795
TspMI CCCGGG 1 cut(s) 113
TspRI CASTG 5 cut(s) 102, 154, 247, 409, 1114
Van91I CCANNNNNTGG 2 cut(s) 33, 850
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 2 cut(s) 676, 965
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmaI CCCGGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 641
ZrmI AGTACT 1 cut(s) 686
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.