Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002263

Physical Location & Seq

Genomic Coordinates Forward (+)

4852893 .. 4855830

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22321

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGATCTTCCTTTTAAGCTCTACACTGGAGATGTTTTACTACTTCATTGAGTCAGAAGGAAACCCCAAAGAAGATCCTTTGTTGTTGTGGTATACTGGAGGCCCTGGCTGTTCTGTTATCAGTGGTCTCATTTACGAAAATGGTATACAGCTTATGAAGGAGGGTTACCTATCTACATATTACTACCCATACTCATGGACAAGGACTGCAAGTGTATTGTTCGTGGATGCACCAGTTGGCACTGGTTTTTCCTATGCAACTAGTGCAGATGAATTCCCTTCTTCAGATTTAAAAACAGCAGCACAGGTTTATGGATTTTTGAGGAAGTGGTTGGAAGAGCACCCACAATTTCTCAAAGTTCAGCTATTTATTGGGGCCGACTCATATTCAGGCCTGACGGGCACCATCGTTGGCAAATACATAATAGATGACAATGGTGCTGGAGGGTATGTTCTAGGGTGTCCACTTACTGATCAAGCTCTCAATGAGAATTCAAGGTATGTTTTTTCTCATTGGATGGGGCTTATATCAGATGAACTCTACGAGGCAGCTAAAGAAAGCTGCAATTCAAGGCTCCATGGTGCTACCACGTCAGAGCCAGAATGCTATGAGGACGTTCAATTGATGGCAAAGACCTTCAATGATATGCTGGCTTATGTATGGGCAAACAATGAAGGTGTAAGAAAGGCACTTAATGTCAGAGAGGGAACAGTACTAGATTGGAAGAGATGCAATATAAGTTTGTTATACACAGAAGATGTGGAAAGTGTCGTTGAGTATCATAATTACCTCAGTACCAAGGGATTACAAGTTCTGATATTCAATGGTGATCATGACCTTACAGTCCCAAACACCGGTACGGAACAGTGGATAAGAAGTTTGGATTTGCCTGTTGTCCAATATTGGAGACCGTGGCTAGTTGATGGTCAAATTGCTGGATACACTGTCAAGTATTCAAGTAGTGAGGGATACCGTTTGACTTATGCAACTGTAAAGGGTGCTGTGCACTCAGCTCCAGAATACAAGCGTAGGGAATGTTATCTCATGTTTGATAGGTTCATCCATTACTATCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

360

Amino Acids

40.92

Weight (kDa)

4.86

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	9 - 213	6.4e-57	Serine carboxypeptidase
Peptidase_S10	PF00450	218 - 356	1.1e-31	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523 FvH4_2g03523
rosa_chinensis	RchiOBHm_Chr6g0248961 RchiOBHm_Chr6g0248981 RchiOBHm_Chr6g0248991 RchiOBHm_Chr6g0249001
rosa_laevigata	RLG00000015104 RLG00000015105 RLG00000015106
rosa_multiflora	Rmu_co8226213.1_g000001 Rmu_co8479945.1_g000001 Rmu_sc0003692.1_g000024 Rmu_sc0003692.1_g000025 Rmu_sc0003692.1_g000026
rosa_roxburghii	Rroxscaffold_7G00212800
rosa_rugosa	Rorug05G0534700 Rorug05G0534800 Rorug05G0534900
rosa_samantha	Rh6AG052000 Rh6AG052100 Rh6CG044100 Rh6CG044200 Rh6CG044300 Rh6DG039300 Rh6DG039400 Rh6DG039500
rosa_wichuraiana	Rw6G004610 Rw6G004620 Rw6G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	2 cut(s)	95, 148
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	275, 493
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	717, 799, 862
AfiI	CCNNNNNNNGG	1 cut(s)	857
AgeI	ACCGGT	1 cut(s)	857
AgsI	TTSAA	6 cut(s)	498, 573, 623, 643, 826, 960
AhlI	ACTAGT	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	1 cut(s)	106
AloI	GAACNNNNNNTCC	4 cut(s)	438, 470, 798, 830
AluBI	AGCT	7 cut(s)	21, 154, 367, 482, 554, 564, 1016
AluI	AGCT	7 cut(s)	21, 154, 367, 482, 554, 564, 1016
Alw21I	GWGCWC	2 cut(s)	345, 1011
Alw26I	GTCTC	2 cut(s)	134, 904
Alw44I	GTGCAC	1 cut(s)	1007
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	3 cut(s)	103, 378, 394
ApaLI	GTGCAC	1 cut(s)	1007
ApeKI	GCWGC	3 cut(s)	302, 551, 564
ApoI	RAATTY	2 cut(s)	275, 493
AsiGI	ACCGGT	1 cut(s)	857
AspS9I	GGNCC	2 cut(s)	104, 378
AsuHPI	GGTGA	2 cut(s)	16, 842
BaeGI	GKGCMC	2 cut(s)	407, 1011
BaeI	ACNNNNGTAYC	2 cut(s)	781, 814
BanI	GGYRCC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
Bbv12I	GWGCWC	2 cut(s)	345, 1011
BbvI	GCAGC	3 cut(s)	314, 551, 563
BccI	CCATC	4 cut(s)	416, 514, 622, 920
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	2 cut(s)	935, 965
BclI	TGATCA	2 cut(s)	475, 832
BcoDI	GTCTC	2 cut(s)	134, 904
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	4 cut(s)	264, 458, 719, 920
BfuI	GTATCC	2 cut(s)	935, 965
BglI	GCCNNNNNGGC	1 cut(s)	402
BisI	GCNGC	3 cut(s)	303, 552, 565
BlsI	GCNGC	3 cut(s)	304, 553, 566
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	104, 378
BmiI	GGNNCC	3 cut(s)	379, 406, 578
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	220, 722
BpmI	CTGGAG	4 cut(s)	50, 120, 465, 1002
BsaI	GGTCTC	2 cut(s)	134, 904
BsaJI	CCNNGG	4 cut(s)	106, 580, 801, 914
BsaWI	WCCGGW	1 cut(s)	857
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	4 cut(s)	33, 103, 236, 250
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	106, 580, 801, 914
BseGI	GGATG	3 cut(s)	235, 525, 1062
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMII	CTCAG	2 cut(s)	808, 1026
BseNI	ACTGG	4 cut(s)	33, 103, 236, 250
BseSI	GKGCMC	2 cut(s)	407, 1011
BseXI	GCAGC	3 cut(s)	314, 551, 563
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	105, 380, 396
BshNI	GGYRCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	857
BsiHKAI	GWGCWC	2 cut(s)	345, 1011
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	1 cut(s)	857
BsmAI	GTCTC	2 cut(s)	134, 904
BsmFI	GGGAC	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	105, 380, 396
Bso31I	GGTCTC	2 cut(s)	134, 904
Bsp1286I	GDGCHC	3 cut(s)	345, 407, 1011
Bsp143I	GATC	4 cut(s)	6, 76, 475, 832
Bsp19I	CCATGG	1 cut(s)	580
BspANI	GGCC	3 cut(s)	105, 380, 396
BspCNI	CTCAG	2 cut(s)	807, 1025
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	3 cut(s)	379, 406, 578
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	134, 904
BsrFI	RCCGGY	1 cut(s)	857
BsrI	ACTGG	4 cut(s)	33, 103, 236, 250
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	4 cut(s)	106, 580, 801, 914
BssMI	GATC	4 cut(s)	6, 76, 475, 832
BssNAI	GTATAC	2 cut(s)	96, 149
BssT1I	CCWWGG	2 cut(s)	580, 801
Bst1107I	GTATAC	2 cut(s)	96, 149
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	7 cut(s)	715, 847, 870, 915, 949, 977, 994
Bst6I	CTCTTC	2 cut(s)	333, 722
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	2 cut(s)	794, 1012
BstDSI	CCRYGG	2 cut(s)	580, 914
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	235, 525, 1062
BstKTI	GATC	4 cut(s)	9, 79, 478, 835
BstMAI	GTCTC	2 cut(s)	134, 904
BstMBI	GATC	4 cut(s)	6, 76, 475, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 402
BstNI	CCWGG	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	2 cut(s)	407, 1011
BstV1I	GCAGC	3 cut(s)	314, 551, 563
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	76
BstZ17I	GTATAC	2 cut(s)	96, 149
BsuI	GTATCC	2 cut(s)	935, 965
BsuRI	GGCC	3 cut(s)	105, 380, 396
BtgI	CCRYGG	2 cut(s)	580, 914
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	3 cut(s)	235, 525, 1062
BtsIMutI	CAGTG	5 cut(s)	26, 130, 243, 875, 945
Cac8I	GCNNGC	1 cut(s)	654
CciI	TCATGA	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	2 cut(s)	104, 378
Csp6I	GTAC	3 cut(s)	716, 798, 861
CspAI	ACCGGT	1 cut(s)	857
CviAII	CATG	4 cut(s)	198, 581, 836, 1048
CviQI	GTAC	3 cut(s)	716, 798, 861
DdeI	CTNAG	2 cut(s)	794, 1012
DpnI	GATC	4 cut(s)	8, 78, 477, 834
DpnII	GATC	4 cut(s)	6, 76, 475, 832
DraI	TTTAAA	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	845
Eam1104I	CTCTTC	2 cut(s)	333, 722
EarI	CTCTTC	2 cut(s)	333, 722
Eco130I	CCWWGG	2 cut(s)	580, 801
Eco147I	AGGCCT	1 cut(s)	396
Eco31I	GGTCTC	2 cut(s)	134, 904
Eco57I	CTGAAG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	167
EcoRI	GAATTC	2 cut(s)	275, 493
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	580, 801
ErhI	CCWWGG	2 cut(s)	580, 801
FaeI	CATG	4 cut(s)	201, 584, 839, 1051
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	4 cut(s)	197, 580, 835, 1047
FbaI	TGATCA	2 cut(s)	475, 832
FblI	GTMKAC	2 cut(s)	95, 148
Fnu4HI	GCNGC	3 cut(s)	303, 552, 565
FokI	GGATG	3 cut(s)	242, 532, 1049
Fsp4HI	GCNGC	3 cut(s)	303, 552, 565
FspBI	CTAG	4 cut(s)	264, 458, 719, 920
GluI	GCNGC	3 cut(s)	303, 552, 565
GsuI	CTGGAG	4 cut(s)	50, 120, 465, 1002
HaeIII	GGCC	3 cut(s)	105, 380, 396
HapII	CCGG	1 cut(s)	858
Hin1II	CATG	4 cut(s)	201, 584, 839, 1051
HinfI	GANTC	2 cut(s)	53, 383
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	2 cut(s)	16, 842
Hpy166II	GTNNAC	4 cut(s)	96, 149, 467, 1009
Hpy188I	TCNGA	7 cut(s)	58, 289, 535, 598, 704, 819, 1082
Hpy188III	TCNNGA	2 cut(s)	836, 1019
Hpy8I	GTNNAC	4 cut(s)	96, 149, 467, 1009
HpyAV	CCTTC	5 cut(s)	53, 154, 291, 649, 671
HpyCH4III	ACNGT	7 cut(s)	715, 847, 870, 915, 949, 977, 994
HpyCH4IV	ACGT	2 cut(s)	593, 618
HpyCH4V	TGCA	8 cut(s)	212, 233, 260, 269, 567, 735, 989, 1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 402
HpyF3I	CTNAG	2 cut(s)	794, 1012
HpySE526I	ACGT	2 cut(s)	593, 618
Hsp92II	CATG	4 cut(s)	201, 584, 839, 1051
Ksp22I	TGATCA	2 cut(s)	475, 832
Kzo9I	GATC	4 cut(s)	6, 76, 475, 832
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	582, 1021
Lsp1109I	GCAGC	3 cut(s)	314, 551, 563
LweI	GCATC	2 cut(s)	220, 722
MaeI	CTAG	4 cut(s)	264, 458, 719, 920
MaeII	ACGT	2 cut(s)	593, 618
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	8, 78, 477, 834
MboI	GATC	4 cut(s)	6, 76, 475, 832
MboII	GAAGA	5 cut(s)	86, 276, 350, 739, 770
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	345, 407, 1011
MluCI	AATT	7 cut(s)	275, 350, 493, 568, 623, 787, 933
MlyI	GAGTC	2 cut(s)	62, 377
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	95, 157, 318, 440, 541, 607, 700, 803, 961
MseI	TTAA	3 cut(s)	17, 293, 696
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	266, 402
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	6, 76, 475, 832
NlaIII	CATG	4 cut(s)	201, 584, 839, 1051
NlaIV	GGNNCC	3 cut(s)	379, 406, 578
PagI	TCATGA	1 cut(s)	835
PceI	AGGCCT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	857
PkrI	GCNGC	3 cut(s)	304, 553, 566
PleI	GAGTC	2 cut(s)	61, 377
PpsI	GAGTC	2 cut(s)	61, 377
Psp6I	CCWGG	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	379, 406, 578
PspPI	GGNCC	2 cut(s)	104, 378
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	3 cut(s)	717, 799, 862
RsaNI	GTAC	3 cut(s)	716, 798, 861
RseI	CAYNNNNRTG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	17, 293, 696
SatI	GCNGC	3 cut(s)	303, 552, 565
Sau3AI	GATC	4 cut(s)	6, 76, 475, 832
Sau96I	GGNCC	2 cut(s)	104, 378
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	2 cut(s)	62, 377
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	3 cut(s)	345, 407, 1011
SfaNI	GCATC	2 cut(s)	220, 722
SmiMI	CAYNNNNRTG	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	7 cut(s)	275, 350, 493, 568, 623, 787, 933
SseBI	AGGCCT	1 cut(s)	396
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	4 cut(s)	264, 458, 719, 920
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	580, 801
TaaI	ACNGT	7 cut(s)	715, 847, 870, 915, 949, 977, 994
TaiI	ACGT	2 cut(s)	596, 621
TasI	AATT	7 cut(s)	275, 350, 493, 568, 623, 787, 933
TatI	WGTACW	1 cut(s)	715
Tru1I	TTAA	3 cut(s)	17, 293, 696
Tru9I	TTAA	3 cut(s)	17, 293, 696
TscAI	CASTG	5 cut(s)	33, 130, 250, 875, 952
TseI	GCWGC	3 cut(s)	302, 551, 564
TspDTI	ATGAA	6 cut(s)	37, 173, 288, 552, 690, 1051
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	5 cut(s)	33, 130, 250, 875, 952
VneI	GTGCAC	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	275, 493
XmiI	GTMKAC	2 cut(s)	95, 148
XspI	CTAG	4 cut(s)	264, 458, 719, 920
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.