RchiOBHm_Chr5g0012891

Ribosomal_L32e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003194
Physical Location & Seq
Reverse (-)
8741064 .. 8743383
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCGGTTCCGTTGTTGAAGAAGGCGATCGTGAAGAAGAGGGTCAAGCAATTTAAGAGGCCCCAAAGTGACCGCAAGATCTGCGTCAAGACCAACTGGAGGAGGCCTAAGGGTATTGACTCTCGTGTACGAAGAAAGTTCAAGGGAGTTACTCTCATGCCCAACATTGGTTATGGTTCTGACAAGAAGACCCGCCATTATCTTCCCAATCATTTCAAGAAGTTTGTTGTGCACAATGTCAAGGAGCTAGAAGTTCTGATGATGCACAATAGGACCTATTGTGCCGAGATTGCACACAATATCTCCACTAGGAAGAGGAAGGAAATTGTTGAGAGAGCCGCGCAGCTTGACGTCGTTGTCACTAACAAGCTTGCTAGGTTGCGTAGCCAAGAGGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32e

Protein Analysis

133

Amino Acids

15.72

Weight (kDa)

10.7

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32e PF01655 16 - 122 1e-47 Ribosomal protein L32
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AatII GACGTC 1 cut(s) 354
AccII CGCG 1 cut(s) 341
AciI CCGC 4 cut(s) 5, 73, 193, 339
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 99, 167
AgsI TTSAA 3 cut(s) 19, 142, 217
AluBI AGCT 3 cut(s) 247, 346, 370
AluI AGCT 3 cut(s) 247, 346, 370
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
AoxI GGCC 2 cut(s) 59, 104
ApaLI GTGCAC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 343
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 60, 273
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 234
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 355
BfaI CTAG 3 cut(s) 248, 309, 375
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 339, 344
BlsI GCNGC 2 cut(s) 340, 345
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 60, 273
BmiI GGNNCC 2 cut(s) 9, 62
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpmI CTGGAG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 167
Bse1I ACTGG 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 99, 167
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 61, 106
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 99, 167
BsnI GGCC 2 cut(s) 61, 106
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 27, 78
BspACI CCGC 4 cut(s) 5, 73, 193, 339
BspANI GGCC 2 cut(s) 61, 106
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 9, 62
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 27, 78
BssNI GRCGYC 1 cut(s) 351
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst6I CTCTTC 2 cut(s) 32, 308
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 30, 81
BstMBI GATC 2 cut(s) 27, 78
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 81, 290
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 61, 106
BtsCI GGATG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 60, 273
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 157
CviJI RGCY 7 cut(s) 61, 106, 247, 338, 346, 370, 387
CviKI_1 RGCY 7 cut(s) 61, 106, 247, 338, 346, 370, 387
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 29, 80
DpnII GATC 2 cut(s) 27, 78
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
Eam1104I CTCTTC 2 cut(s) 32, 308
EarI CTCTTC 2 cut(s) 32, 308
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 108
EcoO109I RGGNCCY 2 cut(s) 60, 273
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 158, 174
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 339, 344
Fsp4HI GCNGC 2 cut(s) 339, 344
FspBI CTAG 3 cut(s) 248, 309, 375
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 339, 344
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 2 cut(s) 61, 106
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 128, 232
Hpy188I TCNGA 2 cut(s) 181, 258
Hpy188III TCNNGA 3 cut(s) 31, 88, 217
Hpy8I GTNNAC 2 cut(s) 128, 232
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 16, 313
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 232, 265, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 290
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 27, 78
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 252
MaeI CTAG 3 cut(s) 248, 309, 375
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 68, 148, 358
MalI GATC 2 cut(s) 29, 80
MboI GATC 2 cut(s) 27, 78
MboII GAAGA 7 cut(s) 31, 46, 49, 144, 194, 199, 325
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 50, 324
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 6 cut(s) 33, 51, 93, 96, 309, 385
MseI TTAA 1 cut(s) 54
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 81, 290
NdeII GATC 2 cut(s) 27, 78
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 9, 62
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 68, 358
PceI AGGCCT 1 cut(s) 106
PkrI GCNGC 2 cut(s) 340, 345
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 9, 62
PspPI GGNCC 2 cut(s) 60, 273
PspPPI RGGWCCY 1 cut(s) 273
PsuI RGATCY 1 cut(s) 78
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 339, 344
Sau3AI GATC 2 cut(s) 27, 78
Sau96I GGNCC 2 cut(s) 60, 273
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 234
SetI ASST 6 cut(s) 249, 278, 348, 354, 372, 380
SfaNI GCATC 1 cut(s) 252
SinI GGWCC 1 cut(s) 273
Sse9I AATT 2 cut(s) 50, 324
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 5, 73, 193, 339
SspMI CTAG 3 cut(s) 248, 309, 375
StuI AGGCCT 1 cut(s) 106
TaiI ACGT 1 cut(s) 354
TasI AATT 2 cut(s) 50, 324
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 2 cut(s) 68, 358
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 2 cut(s) 68, 358
VneI GTGCAC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 273
XspI CTAG 3 cut(s) 248, 309, 375
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.