RchiOBHm_Chr5g0051801

anion transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004686
Physical Location & Seq
Reverse (-)
53166140 .. 53168301
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGTCACTAGAGGTGAAGTATGACGATGAACGGGTCGGGTTTTCGATTGCATATACTGTTGCTGCCGATGCTGCAGGGGTAAACCAATCGAGTAAAGGCACAATTCTTTCTACATTCTATTATGGTTATGCTTGTTCACAAGTACCTGGAGGTTGGGCAGCTCAGAAAATTGGGGGAAGGAAGGTTCTTCTTCTTTCATTTGTGTTATGGTCAGCTACGTGTGCATTAGTTCCTCTAGACCCCAATCGAATCTTTGTCTTGGTGATTGCTCGGTTGCTTGTGGGCGTTGCACAAGGATTCATTTTCCCCTCAATCCACACAGTTCTAGCTCAGTGGGTTCCACCACATGAAAGATCCAGATCTGTTTCTCTTACTACTTCTGGTATGTACCTAGGAGCAGCTGCAGGAATGCTTCTCCTTCCAAGCCTTGTAAAGTACAGGGGCCCCCAATCCGTATTTCTTGCTGAGGCAGCATTAGGTGCCATGTGGTCTTTGCTGTGGTTCAAGTATGCCAGTGATCCACCTTCCTCTCAACATCCAAAAGCAACAGCTGCTGGTTTTGGGGAATCTTTGTTGCCGACCAAAGGAAACCAAAAGTTGAAAGTAGAGAATGGAGGAAGTTCCACTAGAACTGCCAAGATCCCATGGAAGAGAATTTTACTCAGTTTGCCAGTTTGGGCAATCGTGGTTAATAATTTCACGTTCCATTATGCTTTATACGTGTTGATGAACTGGCTGCCCACATACTTTGAATTAGGCCTCCAACTTAGCCTTCAGGAAATGGGTTCTTCTAAGATGTTGCCGTATCTCAACATGTTTATTTTCTCAAATATAGGTGGGGTGGTAGCTGACCATTTAGTCACCAAGAGAATATTGTCTGTGACTAATACTCGCAAGTTCTTGAACACCATTGGTTTCATAGTTGCTTCTCTTGCGTTGATGGCAATTCCCATCTTCCGAACTTCTGCTGGGGCTGTCTTTTGTTCTTCTGTAGCTCTTGGTTTCTTGGCACTCGGGAGGGCTGGTTTTGCAGTGAATCACATGGATATTGCCCCGAGATATGCTGGTATTGTAATGGGAGTTTCAAACACTGCTGGTACCTTAGCTGGCATTATTGGAGTTGATCTGACTGGCAAGCTTCTTGAAGCTGCAAGAACTGCTGATTCGAGTCTTTCAAGTCCAGAGAGCTGGAGACTGGTGTTTTTAATTCCGGGTCTGCTCTGCGTTTTCAGTTCTTTTGTATTTTTACTATTCTCAACCGGGGAGAGAATTTTTGACTGA

Protein Analysis

426

Amino Acids

45.95

Weight (kDa)

9.57

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 14 - 373 6.8e-49 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 857
Acc65I GGTACC 1 cut(s) 1097
AccB1I GGYRCC 2 cut(s) 479, 1097
AclWI GGATC 3 cut(s) 348, 512, 634
AcsI RAATTY 2 cut(s) 654, 1269
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 4 cut(s) 144, 389, 437, 1099
AfiI CCNNNNNNNGG 1 cut(s) 584
AflIII ACRYGT 3 cut(s) 218, 720, 813
AgsI TTSAA 7 cut(s) 505, 601, 752, 904, 1086, 1145, 1176
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 4 cut(s) 441, 473, 756, 788
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
Alw26I GTCTC 1 cut(s) 1186
AlwI GGATC 3 cut(s) 348, 512, 634
AlwNI CAGNNNCTG 1 cut(s) 554
Ama87I CYCGRG 2 cut(s) 1013, 1054
AoxI GGCC 2 cut(s) 442, 757
ApaI GGGCCC 1 cut(s) 446
ApeKI GCWGC 9 cut(s) 62, 71, 158, 398, 401, 470, 551, 736, 1148
ApoI RAATTY 2 cut(s) 654, 1269
Asp718I GGTACC 1 cut(s) 1097
AspA2I CCTAGG 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 442, 443
AsuC2I CCSGG 2 cut(s) 1212, 1261
AsuHPI GGTGA 3 cut(s) 25, 274, 853
AvaI CYCGRG 2 cut(s) 1013, 1054
AvrII CCTAGG 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 446
BanI GGYRCC 2 cut(s) 479, 1097
BanII GRGCYC 1 cut(s) 446
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 9 cut(s) 49, 58, 170, 388, 410, 482, 538, 723, 1135
BccI CCATC 2 cut(s) 934, 959
BceAI ACGGC 1 cut(s) 787
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 2 cut(s) 1212, 1261
BcoDI GTCTC 1 cut(s) 1186
BfaI CTAG 5 cut(s) 8, 236, 326, 392, 627
BfmI CTRYAG 3 cut(s) 72, 402, 990
BglII AGATCT 1 cut(s) 359
BisI GCNGC 9 cut(s) 63, 72, 159, 399, 402, 471, 552, 737, 1149
BlnI CCTAGG 1 cut(s) 391
BlsI GCNGC 9 cut(s) 64, 73, 160, 400, 403, 472, 553, 738, 1150
Bme1390I CCNGG 3 cut(s) 147, 1212, 1261
BmeT110I CYCGRG 2 cut(s) 1013, 1054
BmgT120I GGNCC 2 cut(s) 442, 443
BmiI GGNNCC 6 cut(s) 339, 443, 444, 445, 481, 1099
BmrFI CCNGG 3 cut(s) 147, 1212, 1261
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 168, 1210
Bpu10I CCTNAGC 2 cut(s) 465, 1102
BpuMI CCSGG 2 cut(s) 1212, 1261
BsaAI YACGTR 2 cut(s) 219, 721
BsaBI GATNNNNATC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 391, 644, 1260
BsaXI ACNNNNNCTCC 2 cut(s) 1009, 1039
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 5 cut(s) 513, 671, 737, 1135, 1200
Bse8I GATNNNNATC 1 cut(s) 358
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 391, 644, 1260
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 4 cut(s) 176, 344, 456, 676
BseNI ACTGG 5 cut(s) 513, 671, 737, 1135, 1200
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 9 cut(s) 49, 58, 170, 388, 410, 482, 538, 723, 1135
BseYI CCCAGC 1 cut(s) 968
BshFI GGCC 2 cut(s) 444, 759
BshNI GGYRCC 2 cut(s) 479, 1097
BsiHKCI CYCGRG 2 cut(s) 1013, 1054
BsiSI CCGG 2 cut(s) 1211, 1260
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 1186
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 2 cut(s) 444, 759
BsoBI CYCGRG 2 cut(s) 1013, 1054
Bsp120I GGGCCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 5 cut(s) 353, 359, 517, 639, 1123
Bsp19I CCATGG 1 cut(s) 644
BspANI GGCC 2 cut(s) 444, 759
BspCNI CTCAG 4 cut(s) 175, 343, 457, 675
BspLI GGNNCC 6 cut(s) 339, 443, 444, 445, 481, 1099
BspMAI CTGCAG 2 cut(s) 76, 406
BspPI GGATC 3 cut(s) 348, 512, 634
BspT107I GGYRCC 2 cut(s) 479, 1097
BsrI ACTGG 5 cut(s) 513, 671, 737, 1135, 1200
BssECI CCNNGG 3 cut(s) 391, 644, 1260
BssMI GATC 5 cut(s) 353, 359, 517, 639, 1123
BssT1I CCWWGG 2 cut(s) 391, 644
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 58, 322
Bst6I CTCTTC 1 cut(s) 644
BstAPI GCANNNNNTGC 3 cut(s) 479, 551, 1157
BstBAI YACGTR 2 cut(s) 219, 721
BstC8I GCNNGC 2 cut(s) 1108, 1136
BstDEI CTNAG 7 cut(s) 162, 330, 465, 662, 767, 792, 1102
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 5 cut(s) 356, 362, 520, 642, 1126
BstMAI GTCTC 1 cut(s) 1186
BstMBI GATC 5 cut(s) 353, 359, 517, 639, 1123
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 3 cut(s) 145, 1210, 1259
BstSFI CTRYAG 3 cut(s) 72, 402, 990
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 9 cut(s) 49, 58, 170, 388, 410, 482, 538, 723, 1135
BstX2I RGATCY 3 cut(s) 353, 359, 639
BstXI CCANNNNNNTGG 1 cut(s) 1188
BstYI RGATCY 3 cut(s) 353, 359, 639
BsuRI GGCC 2 cut(s) 444, 759
BtgI CCRYGG 1 cut(s) 644
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 2 cut(s) 1038, 1089
BtsIMutI CAGTG 4 cut(s) 338, 520, 1038, 1089
Cac8I GCNNGC 2 cut(s) 1108, 1136
CaiI CAGNNNCTG 1 cut(s) 554
Cfr13I GGNCC 2 cut(s) 442, 443
Csp6I GTAC 4 cut(s) 143, 388, 436, 1098
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 5 cut(s) 347, 484, 645, 814, 1042
CviQI GTAC 4 cut(s) 143, 388, 436, 1098
DdeI CTNAG 7 cut(s) 162, 330, 465, 662, 767, 792, 1102
DpnI GATC 5 cut(s) 355, 361, 519, 641, 1125
DpnII GATC 5 cut(s) 353, 359, 517, 639, 1123
DrdI GACNNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 857
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 391, 644
Eco147I AGGCCT 1 cut(s) 759
Eco24I GRGCYC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 2 cut(s) 1013, 1054
EcoO109I RGGNCCY 2 cut(s) 442, 443
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 391, 644
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 2 cut(s) 391, 644
FaeI CATG 5 cut(s) 350, 487, 648, 817, 1045
FatI CATG 5 cut(s) 346, 483, 644, 813, 1041
Fnu4HI GCNGC 9 cut(s) 63, 72, 159, 399, 402, 471, 552, 737, 1149
FokI GGATG 1 cut(s) 522
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 9 cut(s) 63, 72, 159, 399, 402, 471, 552, 737, 1149
FspBI CTAG 5 cut(s) 8, 236, 326, 392, 627
GluI GCNGC 9 cut(s) 63, 72, 159, 399, 402, 471, 552, 737, 1149
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 2 cut(s) 168, 1210
HaeIII GGCC 2 cut(s) 444, 759
HapII CCGG 2 cut(s) 1211, 1260
Hin1II CATG 5 cut(s) 350, 487, 648, 817, 1045
HindIII AAGCTT 1 cut(s) 1136
HinfI GANTC 6 cut(s) 249, 297, 566, 1036, 1163, 1168
HpaII CCGG 2 cut(s) 1211, 1260
HphI GGTGA 3 cut(s) 25, 274, 853
Hpy166II GTNNAC 2 cut(s) 82, 137
Hpy188I TCNGA 3 cut(s) 165, 959, 1128
Hpy188III TCNNGA 7 cut(s) 236, 357, 776, 901, 1015, 1142, 1181
Hpy8I GTNNAC 2 cut(s) 82, 137
HpyAV CCTTC 5 cut(s) 171, 175, 428, 534, 782
HpyCH4III ACNGT 2 cut(s) 58, 322
HpyCH4IV ACGT 3 cut(s) 218, 701, 720
HpyCH4V TGCA 7 cut(s) 50, 74, 224, 290, 404, 1031, 1151
HpyF3I CTNAG 7 cut(s) 162, 330, 465, 662, 767, 792, 1102
HpySE526I ACGT 3 cut(s) 218, 701, 720
Hsp92II CATG 5 cut(s) 350, 487, 648, 817, 1045
KpnI GGTACC 1 cut(s) 1101
Kzo9I GATC 5 cut(s) 353, 359, 517, 639, 1123
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 9 cut(s) 49, 58, 170, 388, 410, 482, 538, 723, 1135
LweI GCATC 1 cut(s) 58
MaeI CTAG 5 cut(s) 8, 236, 326, 392, 627
MaeII ACGT 3 cut(s) 218, 701, 720
MaeIII GTNAC 3 cut(s) 3, 859, 880
MalI GATC 5 cut(s) 355, 361, 519, 641, 1125
MboI GATC 5 cut(s) 353, 359, 517, 639, 1123
MboII GAAGA 6 cut(s) 179, 182, 661, 780, 946, 978
MflI RGATCY 3 cut(s) 353, 359, 639
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 8 cut(s) 102, 168, 654, 694, 752, 945, 1206, 1269
MlyI GAGTC 1 cut(s) 1177
MmeI TCCRAC 1 cut(s) 787
MnlI CCTC 9 cut(s) 4, 143, 243, 319, 460, 538, 608, 770, 1011
MseI TTAA 2 cut(s) 690, 1205
MspA1I CMGCKG 2 cut(s) 401, 551
MspI CCGG 2 cut(s) 1211, 1260
MspR9I CCNGG 3 cut(s) 147, 1212, 1261
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 147
NciI CCSGG 2 cut(s) 1212, 1261
NcoI CCATGG 1 cut(s) 644
NdeII GATC 5 cut(s) 353, 359, 517, 639, 1123
NlaIII CATG 5 cut(s) 350, 487, 648, 817, 1045
NlaIV GGNNCC 6 cut(s) 339, 443, 444, 445, 481, 1099
NmuCI GTSAC 3 cut(s) 3, 859, 880
NspI RCATGY 1 cut(s) 817
PceI AGGCCT 1 cut(s) 759
PciI ACATGT 1 cut(s) 813
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 5 cut(s) 249, 297, 566, 1036, 1163
PkrI GCNGC 9 cut(s) 64, 73, 160, 400, 403, 472, 553, 738, 1150
PleI GAGTC 1 cut(s) 1176
PpsI GAGTC 1 cut(s) 1176
Ppu21I YACGTR 2 cut(s) 219, 721
PscI ACATGT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 6 cut(s) 339, 443, 444, 445, 481, 1099
PspOMI GGGCCC 1 cut(s) 442
PspPI GGNCC 2 cut(s) 442, 443
PstI CTGCAG 2 cut(s) 76, 406
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 3 cut(s) 353, 359, 639
PvuII CAGCTG 2 cut(s) 401, 551
RsaI GTAC 4 cut(s) 144, 389, 437, 1099
RsaNI GTAC 4 cut(s) 143, 388, 436, 1098
SaqAI TTAA 2 cut(s) 690, 1205
SatI GCNGC 9 cut(s) 63, 72, 159, 399, 402, 471, 552, 737, 1149
Sau3AI GATC 5 cut(s) 353, 359, 517, 639, 1123
Sau96I GGNCC 2 cut(s) 442, 443
SchI GAGTC 1 cut(s) 1177
ScrFI CCNGG 3 cut(s) 147, 1212, 1261
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 3 cut(s) 72, 402, 990
Sse9I AATT 8 cut(s) 102, 168, 654, 694, 752, 945, 1206, 1269
SseBI AGGCCT 1 cut(s) 759
SspI AATATT 1 cut(s) 873
SspMI CTAG 5 cut(s) 8, 236, 326, 392, 627
StuI AGGCCT 1 cut(s) 759
StyD4I CCNGG 3 cut(s) 145, 1210, 1259
StyI CCWWGG 2 cut(s) 391, 644
TaaI ACNGT 2 cut(s) 58, 322
TaiI ACGT 3 cut(s) 221, 704, 723
TaqI TCGA 4 cut(s) 44, 89, 247, 1166
TasI AATT 8 cut(s) 102, 168, 654, 694, 752, 945, 1206, 1269
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 5 cut(s) 249, 297, 566, 1036, 1163
Tru1I TTAA 2 cut(s) 690, 1205
Tru9I TTAA 2 cut(s) 690, 1205
TscAI CASTG 4 cut(s) 338, 520, 1038, 1096
TseFI GTSAC 3 cut(s) 3, 859, 880
TseI GCWGC 9 cut(s) 62, 71, 158, 398, 401, 470, 551, 736, 1148
Tsp45I GTSAC 3 cut(s) 3, 859, 880
TspDTI ATGAA 6 cut(s) 42, 186, 289, 363, 743, 907
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 4 cut(s) 338, 520, 1038, 1096
XapI RAATTY 2 cut(s) 654, 1269
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 1 cut(s) 817
XmaJI CCTAGG 1 cut(s) 391
XspI CTAG 5 cut(s) 8, 236, 326, 392, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.