Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

47632595 .. 47633359

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAATTCCATCATAATAACCAAGTTGATGCCATTCGTGAGGACATTTCTAAAGGAAGCCAGTCAAATGTTTGAGATGCACATATACACAATGGGCAGTCGAGCTTACGCACTGAAAATGGCTGAGCTGCTTGACCCTGAAAAAGAGTACTTCTTCACCTCCACCTGCAGTTCTAAAATAACATCGCTTGATGATCATAGCTCCCCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGCTGTCAAAATTCTAATGTCTTGATCCTCGACGATATAAGAAACGCATGGACAAAGAAAAATCAGGACAATTTGATAGTAATGCAAAAGTACTATTTCTTCAAATCCACTTGTCATCTCAATAATGTTACCGGTCAATCTCATGCCGAGTTAAGGACCGATGAAAGCGGTTATCTTGAACACATTCTTCGGTGTCTTCAGGGAATCCACGATATCTGGACCAACAATCCTATCGACATTGATGTAAGGCAGGTGTTAAAAATTCTTCGGAAGCGGGTGTTGAAGGGGTGTGTGATTGTTTTTAACTCTCATAACACTAATCTGCGGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCATCACGAGCGGATGCATCATCAGTCACGCATGTGGTTGCAATAAATGCTCGAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTTTGGTCTGCCTACAGTGGATTGAAGCTGCGAGTTACTTGTGGGAAAAACAACCTGAACATAAGTTCTCCATCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

254

Amino Acids

29.21

Weight (kDa)

8.95

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	10 - 114	3.4e-15	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	173, 478
Acc36I	ACCTGC	2 cut(s)	173, 478
AccBSI	CCGCTC	1 cut(s)	605
AccII	CGCG	1 cut(s)	237
AciI	CCGC	5 cut(s)	237, 405, 511, 562, 605
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	3 cut(s)	4, 247, 498
AcuI	CTGAAG	2 cut(s)	419, 692
AfaI	GTAC	2 cut(s)	149, 329
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	340, 416, 520, 707, 760
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AleI	CACNNNNGTG	1 cut(s)	626
AluBI	AGCT	4 cut(s)	104, 127, 201, 710
AluI	AGCT	4 cut(s)	104, 127, 201, 710
AlwI	GGATC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	127, 710
ApoI	RAATTY	3 cut(s)	4, 247, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	393, 456
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	393, 456
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	114, 697
BccI	CCATC	2 cut(s)	17, 761
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	193
BfmI	CTRYAG	2 cut(s)	166, 695
BfuAI	ACCTGC	2 cut(s)	173, 478
BisI	GCNGC	3 cut(s)	128, 238, 711
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	3 cut(s)	129, 239, 712
BmcAI	AGTACT	2 cut(s)	149, 329
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	393, 456
BmgT120I	GGNCC	2 cut(s)	393, 456
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	4 cut(s)	18, 66, 598, 620
BpiI	GAAGAC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	114, 697
Bsh1236I	CGCG	1 cut(s)	237
BshTI	ACCGGT	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	193, 261, 658
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	5 cut(s)	237, 405, 511, 562, 605
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	170
BspMI	ACCTGC	2 cut(s)	173, 478
BspPI	GGATC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	3 cut(s)	193, 261, 658
BssSI	CACGAG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	699
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	196, 264, 661
BstMBI	GATC	3 cut(s)	193, 261, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	166, 695
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	114, 697
BstV2I	GAAGAC	1 cut(s)	425
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	3 cut(s)	110, 668, 704
BveI	ACCTGC	2 cut(s)	173, 478
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	393, 456
Csp6I	GTAC	2 cut(s)	148, 328
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	3 cut(s)	285, 380, 626
CviJI	RGCY	7 cut(s)	59, 104, 122, 127, 201, 240, 710
CviKI_1	RGCY	7 cut(s)	59, 104, 122, 127, 201, 240, 710
CviQI	GTAC	2 cut(s)	148, 328
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	195, 263, 660
DpnII	GATC	3 cut(s)	193, 261, 658
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	393, 456
Eco57I	CTGAAG	2 cut(s)	419, 692
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	613
FaeI	CATG	3 cut(s)	288, 383, 629
FatI	CATG	3 cut(s)	284, 379, 625
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	128, 238, 711
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	3 cut(s)	128, 238, 711
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	128, 238, 711
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	288, 383, 629
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	6 cut(s)	37, 259, 302, 413, 454, 600
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	79, 168, 322, 611, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	288, 383, 629
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	193, 261, 658
LmnI	GCTCC	2 cut(s)	206, 584
Lsp1109I	GCAGC	2 cut(s)	114, 697
LweI	GCATC	4 cut(s)	18, 66, 598, 620
MaeIII	GTNAC	3 cut(s)	364, 619, 716
MalI	GATC	3 cut(s)	195, 263, 660
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	3 cut(s)	193, 261, 658
MboII	GAAGA	9 cut(s)	145, 328, 416, 425, 494, 653, 664, 685, 748
MluCI	AATT	5 cut(s)	4, 247, 307, 498, 760
MnlI	CCTC	4 cut(s)	33, 169, 275, 568
Mph1103I	ATGCAT	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	4 cut(s)	389, 494, 540, 763
MslI	CAYNNNNRTG	1 cut(s)	626
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	641
NdeII	GATC	3 cut(s)	193, 261, 658
NlaIII	CATG	3 cut(s)	288, 383, 629
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	629
OliI	CACNNNNGTG	1 cut(s)	626
PaqCI	CACCTGC	2 cut(s)	173, 478
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	129, 239, 712
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	393, 456
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	149, 329
RsaNI	GTAC	2 cut(s)	148, 328
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	389, 494, 540, 763
SatI	GCNGC	3 cut(s)	128, 238, 711
Sau3AI	GATC	3 cut(s)	193, 261, 658
Sau96I	GGNCC	2 cut(s)	393, 456
ScaI	AGTACT	2 cut(s)	149, 329
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	8 cut(s)	106, 129, 161, 167, 203, 492, 712, 739
SfaNI	GCATC	4 cut(s)	18, 66, 598, 620
SfcI	CTRYAG	2 cut(s)	166, 695
SinI	GGWCC	2 cut(s)	393, 456
SmiMI	CAYNNNNRTG	1 cut(s)	626
Sse9I	AATT	5 cut(s)	4, 247, 307, 498, 760
SsiI	CCGC	5 cut(s)	237, 405, 511, 562, 605
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	100, 267, 471, 646
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	5 cut(s)	4, 247, 307, 498, 760
TatI	WGTACW	2 cut(s)	147, 327
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	4 cut(s)	389, 494, 540, 763
Tru9I	TTAA	4 cut(s)	389, 494, 540, 763
TscAI	CASTG	3 cut(s)	117, 675, 704
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	2 cut(s)	127, 710
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	3 cut(s)	17, 414, 585
TspRI	CASTG	3 cut(s)	117, 675, 704
VpaK11BI	GGWCC	2 cut(s)	393, 456
XapI	RAATTY	3 cut(s)	4, 247, 498
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	420
ZrmI	AGTACT	2 cut(s)	149, 329
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.