Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Forward (+)

11250541 .. 11252163

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTTTTGTACGTTCTTTCCATAGTTACTGTGATCGTATCAGAGAACCTGATTTCTGGGGAGGAGAGTCGGAGCTACTGGTTGGAACTGGTGTTTATACCAAAATCCAGAAGAATATTGTTTATGATGTTGGAGTCCGGAATGTCAAAAGCTTTTGCGATTACTATTAGTATAGAAGAAAGTATATTTTCACACATTTGTTGCTATCTGTGTGTGCGCGCGCACGCACGTGTTCAATACTGGTGTGACCTACATTCAAAACTGCAGGTGCTGTCGCAGTTACTAAAGCAGCCGATCATTGTGTATAAACGAGCGGATGAGCACACAAATGGTGGAGGGGGTTCTGCTTTCATTCCCATTGAAGAATATGGAACCGAGTTTACGCCCAAGAAGGCTGTGAGGCTCTTGTTAATTCACTTAAGTGACAGGAACCATTATGATCTACTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

7.0

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	314
AccII	CGCG	2 cut(s)	219, 221
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	11
AflII	CTTAAG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	236, 258, 362
AleI	CACNNNNGTG	2 cut(s)	228, 420
AluBI	AGCT	2 cut(s)	75, 152
AluI	AGCT	2 cut(s)	75, 152
Alw21I	GWGCWC	1 cut(s)	324
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor13HI	TCCGGA	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	289
AspLEI	GCGC	3 cut(s)	219, 221, 223
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	373, 431
BsaAI	YACGTR	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	83, 93, 245
BseAI	TCCGGA	1 cut(s)	137
BseGI	GGATG	1 cut(s)	322
BseNI	ACTGG	3 cut(s)	83, 93, 245
BsePI	GCGCGC	2 cut(s)	217, 219
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	2 cut(s)	219, 221
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	33, 294, 439
BspACI	CCGC	1 cut(s)	314
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	219, 221
BspLI	GGNNCC	2 cut(s)	373, 431
BspMAI	CTGCAG	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	83, 93, 245
BssHII	GCGCGC	2 cut(s)	217, 219
BssMI	GATC	3 cut(s)	33, 294, 439
Bst4CI	ACNGT	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	219, 221, 225
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	2 cut(s)	219, 221
BstHHI	GCGC	3 cut(s)	219, 221, 223
BstKTI	GATC	3 cut(s)	36, 297, 442
BstMBI	GATC	3 cut(s)	33, 294, 439
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	2 cut(s)	219, 221
BstV1I	GCAGC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	3 cut(s)	219, 221, 225
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	3 cut(s)	219, 221, 223
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	5 cut(s)	75, 152, 292, 395, 403
CviKI_1	RGCY	5 cut(s)	75, 152, 292, 395, 403
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	3 cut(s)	35, 296, 441
DpnII	GATC	3 cut(s)	33, 294, 439
Eco72I	CACGTG	1 cut(s)	230
FaiI	YATR	9 cut(s)	23, 98, 125, 173, 185, 306, 369, 438, 451
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	290
GlaI	GCGC	3 cut(s)	218, 220, 222
GluI	GCNGC	1 cut(s)	290
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	3 cut(s)	219, 221, 223
Hin6I	GCGC	3 cut(s)	217, 219, 221
HinP1I	GCGC	3 cut(s)	217, 219, 221
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	2 cut(s)	67, 134
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	2 cut(s)	43, 72
Hpy188III	TCNNGA	2 cut(s)	108, 138
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	12, 229
HpyCH4V	TGCA	1 cut(s)	265
HpySE526I	ACGT	2 cut(s)	12, 229
HspAI	GCGC	3 cut(s)	217, 219, 221
Kpn2I	TCCGGA	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	33, 294, 439
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	42, 62, 64, 74, 121, 151, 226, 251, 412
Lsp1109I	GCAGC	1 cut(s)	301
MaeII	ACGT	2 cut(s)	12, 229
MaeIII	GTNAC	4 cut(s)	25, 245, 279, 422
MalI	GATC	3 cut(s)	35, 296, 441
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	3 cut(s)	33, 294, 439
MboII	GAAGA	3 cut(s)	123, 188, 374
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	2 cut(s)	76, 143
MmeI	TCCRAC	3 cut(s)	50, 63, 111
MnlI	CCTC	3 cut(s)	55, 329, 393
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	2 cut(s)	410, 419
MslI	CAYNNNNRTG	3 cut(s)	228, 327, 420
MspCI	CTTAAG	1 cut(s)	418
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	2 cut(s)	219, 221
NdeII	GATC	3 cut(s)	33, 294, 439
NlaIV	GGNNCC	2 cut(s)	373, 431
NmuCI	GTSAC	2 cut(s)	245, 422
OliI	CACNNNNGTG	2 cut(s)	228, 420
PaqCI	CACCTGC	1 cut(s)	256
PauI	GCGCGC	2 cut(s)	217, 219
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	2 cut(s)	75, 142
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	75, 142
Ppu21I	YACGTR	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	373, 431
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PstI	CTGCAG	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	271
PteI	GCGCGC	2 cut(s)	217, 219
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	3 cut(s)	228, 327, 420
SaqAI	TTAA	2 cut(s)	410, 419
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	33, 294, 439
SchI	GAGTC	2 cut(s)	76, 143
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	15, 51, 77, 154, 232, 252, 270
SfcI	CTRYAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	3 cut(s)	228, 327, 420
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	15, 232
TasI	AATT	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	410, 419
Tru9I	TTAA	2 cut(s)	410, 419
TseFI	GTSAC	2 cut(s)	245, 422
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	2 cut(s)	245, 422
TspDTI	ATGAA	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.