RchiOBHm_Chr3g0492481

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004130
Physical Location & Seq
Forward (+)
39250482 .. 39268474
17993 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 5703 bp
ATGGCTGTTTCAGATGAGGAGAAAGATTATGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGCAGGCCGGTAGGGGTGGCCGACTTCTCGGATTTATGTTTGGCAATGTCAATGACTCGGGACATCTTGATGTCGATTATCTTGATGAGGATGCGAAGGAACATCTTGCTGCACTTGCCGACAAGCTGGATCCTTCTTTCACAGATATAGATTTGTCAGTAAAATCACAGCGAAAATCAGCTGATGCTGTCGAACAAGATTATGATGAGAAGGCTGAAAATGCAGTTAATTATTTTGATATTGATGAGGAATTTGAGGGACCAGAGATTCAAGCTGCTACTGAGGAGGACCATCTCTTGCCCAAAAAGGAATATCTTTCTGCAGAAGTTTCATGGGCCAAATTACGTGATGCAGGAGATGAGGAGGAGGAAAATTATGATGAGGAAAGTTATCAGGAAGAGGAACATGAGGTGGTTGAAAATGATGTTGATGTTCAGTCTATCTCTGTCTCTGGTGATGAGGGTGTGCATATTGTAGCGGATCATAAAGGACAAACATCTGAGGAGAATGGTTGTGAAATTGGCTCGTTAGATTCTGAAAATTTGGTTGATCATGCAGAAGAGCTTCAGGACATACTTTCAGACAGAAGTTCCACACCATTGCCCGTTCTATGCATAGAAGACGGATTGGTGATCTTACGGTTTTCAGAAATCTTTGGCATTCATGTACCCTTAAAGAAGGCTGAAAAAAGAGACCATAGGTACTCTGTTGCTAAAGATAGGTATGAATCGATGGATATCTCTGATATTGTTGAAGACGATGAAGAGGCATTCCTAAAAGGAACTGGTGACGGAGTTCCATCTTTAAAACAGGCAGGTGCAGTGAAACATGCTATCTCAGAATTCAATAATGATGACTTCGACATTGCAAAATTTGACTTTGTAAAAGAGGATGCCCCTGTGGATTTGTGGGATGGGCCAGGAAAGAGCATGTGCCTCCTCGCAGAACCGATGAAAGAGGATAGCATTGTGGAGCCTTCTATGGAAACAAAATCACCTTTGTGTTCTACATTTTACCCTCTTGATCAGCACGACTGGGAAGAGGAAATTCTTTGGGGAAACTCTCCTGCAACGAGTAACAAGTTTGTTGAAAGTTGTGAAATTTCCGGACCTGATGAAGCTTCAATTAATAGTGAAACCGAACCTGATACTGGGTCACAAAAGATTCAGACACACTCCCAAAAAGAACTTGATGAGAAGGATCCTGGTCTTACGCTACACAGCTACTCTACTCTGTTGGAGCCTTTCGGCTCAAGAAATCTGTCAGGACCGCCATGTCCCAGTTTATCAGAAAGCAGATACCATCCCCAACTTTTAAGGCTAGAATCTCGATATGAAGTGGATGATCTTGCAGATGGTAGAGTGGAGAATTCTGGTGAGAAGCTTCATAAGGGACATGCTGTGAGGCATTTCAGCAAACTTAGCTCAAAAAACAGAGACATACTGGAAGGATCTTGGTTAGATCAAATAATTTGGGACCCAGATATACCCATTAGGAAGCCAAAGCTTATCCTTGATCTTGAAGATGAGCAAATGCTTTTTGAGATTTTGGATAACAAAGACTCTGAACATCTTAAGCTTCATTCAGGGGCCATGATTGTGACTCGCCCTTTAAAGTCAAGCAATGGGGACTCTTTGGAGCTGCCAAATCATGGAGGTCAATTTGGTTGGCGATATGTTGCTAATGACAAACACTATTCAAACAGGAAAACTTCTCAGCAACTAAAATCAAATTCTAAAAAACGCACTGCTCAAGGCATAAAGATTTATCACTCACAACCTGCACTGATGCTACAGACGATGAAGTTGAAGTTGAGCAACAAGGATCTTGCTAATTTTCATCGACCAAAAGCTTTGTGGTATCCCCATGATATTCAAATAGCTGTAAAAGAACAAGGGAAGCTGTCCACTCAAGGACCAATGAGAATTATTATAAAGAGCTTGGGTGGCAAAGGCAGTAAGGTTCATGTAGGTGCTGAGGAAACTGTTTCTTGTGTTAAAGCAAAAGCTTCCAAAAAGCTAGACTTTAAGCCATCCGAAACAGTGAAGATGTTTTACTTGGGGAGGGAACTTGAAGATGATAAAACACTTGCTGCTCAAAATGTTAAACCAAACTCTTTGGTTCATCTTGTTCGTACAAAAATATGTTTGTTGCCAAGGGCACAAAAGCTTCCTGGTGAGAATAAATCTTTGCGGCCTCCTGGAGCATTTAAGAAGAAATCTGACCTTTCCGTGAAAGATGGACATGTCTTTCTGGTTGAGTATTGTGAGGAAAGACCTTTACTTTTGAGCAATGTTGGTATGGGTGCAAGATTATGCACTTATTATCACAAATCAGCCCCAGATGATCAAACTGGTTCGTCGTTGCGGAATGAAAACAGCAGCTTGGGACATGTGATTTCGCTAAACCCTGCTGATAAATCACCTTATCTGGGAGATACGAAAGCTGGATGTCGTCAATCATCTCTGGAAACAAACATGTACAGAGCACCTGTATTTTCTCATAAGGTGCCGTCAACTGATTATCTATTAGTTCGCTCTGCAAAGGGAAAGCTTTCAATTAGACGCATAGACAGGCTAACTGTAGTCGGACAGCAGGAACCTCTCATGGAGGTAATGTCTCCTGGAACCAAGAATCTTCAAAATTACATGATTAGCAGGCTTCTAGTCTACATTTGCCGTGAGTTCCGTGCTGCCGAAAAGCGCCATTTTCTTCCTTGTATCCGTGCAGAAGAGTTACTTTCACAATTTCCTTACCTAACTGATACCTTTATTAAAAAGAAGCTGAAGGAACTTGCGAATTTGCAGAAGGGATCAAATGGAAGATGGATTTGGGTTAAGAAGCGCAATTTCCGGATTTTCTCAGAGGATGAATTACGGAATATGGTGAAGCCAGAAGAGGTATGTGCCTATGAAAGCATGCAAGCTGGTCTTTATAGGCTCAAGCATTTAGGAATTACTGAAACACATCCTTCAGCCATATCATCTGCAATGAGTCGTCTCCCTGATGAAGCAATTACTCTGGCTGCTGCATCCCACATTGAAAGGGAACTACAGATTACTCCATGGAACTTGAGTAGCAATTTTGTAGCTTGTACACTGGGAAAAGAAACTATTGAGCGTTTGGAAATATCTGGTGTGGGTGATCCATCTGGTAGGGGCCTAGGGTTTAGTTATGTTCGTGCTACTCCGAAAGCATCAATGTCAAGCGCTGTTGTGAAGAAGAAATCTGCTGCTGGTCGAGGAGGTTCCACTGTTACCGGAACAGATTCTGATTTACGCAGATTAAGCATGGAAGCTGCACGAGAGGTTCTTCTTAAATTTGGCGTTTCTGATGAACTGATTGCGAGGCAGACTAGATGGCATCGGATTGCAATGATACGTAAGCTATCAAGTGAGCAAGCTGCATCTGGGGTCAAAGTCGATGCAAATACTATCAGCAAATATGCACGTGGACAGCGTATGTCCTTTCTTCAGCTGCAGCAGCAGAACCGTGAGAAGTGTCAAGAAATTTGGGAACGACAAGTTCAGAGTCTTTCAGCTGTAGATGGTGATGAAAATGAAAGTGATTCTGAAGGAAATAATAGTGACCTAGATTCCTTTGCTGGGGATTTAGAAAACCTGCTTGATGCAGAAGAATGTGAAGAAGGGCTAGGGGGTAAACATGAATCCAACTATGATAAGGCAGATGGTGTTAAAGGGCTTAAAATGAGAAGGCGCCCCTCCTTGGCTCAGGCAGAAGAGGAAAATGAAGATGAAGCAGCTGAAGCAGCTGAATTATGCAGGTTACTTATGGATGATGATGAAACTGAGAGGAAGAGAAAAAAGAAAACAAGAGTTGTGGGGGATGAAGCTCGTTTGGGTCCAGGCTCCCGAACAGGTTATGGGTTTGAGAATGCAGATAGGGTAAAGCAAATCATTGATGCAGGACAACCTGATGGTTCCTATACTTCAAAAGAGAATCCAATTGGAGACGCGAAAGTGATGGAAAATCTTCTTAAAAGAAACAAGACTGGAAAACTCAAAGGAATGAAACAGAATGATGCTGCGCCTTTGGGTCTAACAAACAAAAAACTGAAAATATCAGGAGATGGGGTCAACAAGGTGTTTAAGGAGAAGAAATCAGCAAGAGACAGTTTTGTCTGTGGAGCATGTGGTCAGCTTGGACACATGAGGACAAACAAGAACTGCCCCAAGTATGGAGAAGATCACGAAACACACCTGGAAGCTCCAGATCTGGAGAAAGCATCTGGGAAGTCCACTACCCTGAATTCATCTAATCAGTCTCAGCAGAAAACTACTGCAAAGAAGCTGAATAAAAGTGCAGCTAAAATTGCCAGGGTTGAAGCTTCTGAAGTTGAAACCCCAAAGGTTCTCCCAGTGATATTCAAATATGGGTCAACAGAAAAGGTTCCTGATAAACAGGCTCCTGGAGAGACTGAGAGTTCTGAGCGGCCGGCCACATCTGATCCTGAAACTGGGAAGTCTACTCTTAAGGTTAATAAAATAATAATTTCCAAGGCAAAAAAACCTGAAAATGTACCAGTTGAACCACAAAAACCCCCTATAGTTATACGGCCTCCGACTGATATAGTTAGGAGTCATGTTGAACCACAGAAGCCAACCATTGTTATACGACCACCAGCAAATACAGACAGAGATCTGGTGGAATCTGAAAGGCCCTCTACTGGTAAACAGTCATCAATGGAAGCACATAAAGAGCAACAGCATAAGAAAATCATAATTAAGCGTCCCAAAGAAGTTATTGATCTAGATCAAGTCAGTCAGGATGGGAGCACTCGTGATGAGCACAGGAAAACTAAAAGAATTGTTGAATTGACAAGTTCTGGAAAGCACAGGAAGCAGGATAACACAAATTTTGCAAAGGAAGCAGCAAAAAAGAAAGCTAGAGATGATAGGAGATTGTGGGAGGAGCAGGAAAAACGAAGAAATGAAGAGAGATTGAGAGAAGAGAGGGTCAGAAGGCATTATGAAGAGGAAATGAGGATGATAGAGGAGAAAGAAAGAGTAGTGGAGCTCAGGCGATATGAAGCAGCCATCAGACAAGAGAGGGAGGAAGAAGAACGTCAGAAAGCAAGGAACAAGAAGACGAAGAAACGGCCTGCAATAAGAGAGGACTATTTAGAGGACTCACAGACAAGAAGGTTTGATAATAGAATGCCAGAAAGAGATCGAGGCACCAAAAGGAGGCCAGTTGTTGAGTTGGGAAGGTATGGTGGAGAATCTGCCCCAAGTACAAAGCGTCGTAGAGGAGGAGAGGTTGGTTTGGCAAACATCTTGGAGCATATTGTAGAAACCCTCAAAGATCGAATTGAAGTTTCGTATCTTTTTCTTAAACCTGTGTCCAAAAAGGAAGCTCCAGATTACCTGAACTTTGTAGAGCGCCCCATGGATCTATCAACAATTAGGGAGAAGGTAAGGAAAATGGAGTACAAGAGCCGGGAGCAATTCAGGCATGACGTTGCTCAGATCACCATCAATGCCCACTTATATAATGACGGTCGTAATCCAGGTATCCCTCCCCTTGCAGATCAACTTTTAGAGATCTGTGACTATATGCTGATTGAGAATGATGAAAGCTTGACTGAAGCTGAAGCAGGCATTGAATCTGTAGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1900

Amino Acids

214.35

Weight (kDa)

5.74

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 18 - 60 1.4e-10 TATA box-binding protein binding
DUF3591 PF12157 581 - 1145 1.2e-106 Protein of unknown function (DUF3591)
ubiquitin PF00240 663 - 733 1.1e-09 Ubiquitin family
Bromodomain PF00439 1788 - 1862 1.7e-18 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1994
AarI CACCTGC 1 cut(s) 866
AasI GACNNNNNNGTC 2 cut(s) 1335, 4199
Acc36I ACCTGC 4 cut(s) 866, 1849, 3690, 3834
AccB1I GGYRCC 3 cut(s) 2569, 3777, 5258
AccB7I CCANNNNNTGG 1 cut(s) 1712
AccBSI CCGCTC 1 cut(s) 4513
AccI GTMKAC 2 cut(s) 2730, 4547
AccII CGCG 1 cut(s) 4037
AccIII TCCGGA 2 cut(s) 1166, 2913
AciI CCGC 5 cut(s) 539, 1331, 2254, 2428, 4513
AcoI YGGCCR 3 cut(s) 79, 4514, 4518
AcuI CTGAAG 9 cut(s) 611, 2867, 3018, 3518, 3654, 3846, 4434, 5688, 5694
AcvI CACGTG 1 cut(s) 3512
AcyI GRCGYC 1 cut(s) 3778
AfaI GTAC 8 cut(s) 729, 764, 2197, 2543, 3157, 4602, 5317, 5513
AfeI AGCGCT 1 cut(s) 3271
AfiI CCNNNNNNNGG 9 cut(s) 1211, 1712, 2492, 3666, 3787, 4259, 4538, 4748, 5268
AflII CTTAAG 2 cut(s) 1634, 4553
AflIII ACRYGT 3 cut(s) 2305, 2452, 2538
AjuI GAANNNNNNNTTGG 2 cut(s) 2875, 2907
AleI CACNNNNGTG 1 cut(s) 1060
Alw21I GWGCWC 4 cut(s) 2551, 4859, 4872, 5100
Alw26I GTCTC 9 cut(s) 514, 747, 1491, 2685, 3065, 4026, 4185, 4350, 4490
AlwNI CAGNNNCTG 1 cut(s) 3332
Ama87I CYCGRG 1 cut(s) 118
Aor13HI TCCGGA 2 cut(s) 1166, 2913
Aor51HI AGCGCT 1 cut(s) 3271
AseI ATTAAT 1 cut(s) 1188
Asp700I GAANNNNTTC 5 cut(s) 624, 2614, 3328, 4053, 4470
AspA2I CCTAGG 1 cut(s) 3223
AspLEI GCGC 6 cut(s) 2766, 2907, 3272, 3780, 4111, 5466
AsuC2I CCSGG 1 cut(s) 5522
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 7 cut(s) 320, 349, 1169, 1328, 1537, 1976, 3923
AvrII CCTAGG 1 cut(s) 3223
BaeGI GKGCMC 1 cut(s) 2224
BamHI GGATCC 2 cut(s) 190, 1261
BanI GGYRCC 3 cut(s) 2569, 3777, 5258
BanII GRGCYC 1 cut(s) 5100
BarI GAAGNNNNNNTAC 2 cut(s) 2099, 2131
BauI CACGAG 2 cut(s) 3363, 4860
BbrPI CACGTG 1 cut(s) 3512
BbsI GAAGAC 3 cut(s) 687, 822, 5174
Bbv12I GWGCWC 4 cut(s) 2551, 4859, 4872, 5100
BbvCI CCTCAGC 1 cut(s) 2037
BceAI ACGGC 4 cut(s) 2557, 2724, 4652, 5195
BciVI GTATCC 3 cut(s) 1932, 2792, 5606
BclI TGATCA 3 cut(s) 610, 1084, 2407
BcnI CCSGG 1 cut(s) 5522
BcoDI GTCTC 9 cut(s) 514, 747, 1491, 2685, 3065, 4026, 4185, 4350, 4490
BfaI CTAG 9 cut(s) 1382, 2081, 2726, 3224, 3417, 3653, 3713, 4832, 4968
BfmI CTRYAG 8 cut(s) 381, 1853, 2643, 3113, 3539, 3603, 4626, 5691
BfoI RGCGCY 4 cut(s) 2767, 3273, 3781, 5467
BfrI CTTAAG 2 cut(s) 1634, 4553
BfuAI ACCTGC 4 cut(s) 866, 1849, 3690, 3834
BfuI GTATCC 3 cut(s) 1932, 2792, 5606
BglII AGATCT 3 cut(s) 4294, 4720, 5625
BlnI CCTAGG 1 cut(s) 3223
Bme18I GGWCC 7 cut(s) 320, 349, 1169, 1328, 1537, 1976, 3923
BmeT110I CYCGRG 1 cut(s) 118
BmrI ACTGGG 6 cut(s) 1105, 1221, 1335, 3170, 4433, 4548
BmuI ACTGGG 6 cut(s) 1105, 1221, 1335, 3170, 4433, 4548
BpiI GAAGAC 3 cut(s) 687, 822, 5174
BpmI CTGGAG 5 cut(s) 2283, 4275, 4319, 4512, 5424
Bpu10I CCTNAGC 3 cut(s) 2037, 3792, 5099
BpuEI CTTGAG 5 cut(s) 1297, 1797, 1956, 2987, 3154
BpuMI CCSGG 1 cut(s) 5522
Bsa29I ATCGAT 1 cut(s) 791
BsaAI YACGTR 3 cut(s) 407, 3443, 3512
BsaBI GATNNNNATC 3 cut(s) 797, 4833, 5555
BsaHI GRCGYC 1 cut(s) 3778
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 7 cut(s) 2216, 3125, 3223, 3786, 4398, 4578, 5469
BsaWI WCCGGW 3 cut(s) 1166, 2913, 3320
BsaXI ACNNNNNCTCC 8 cut(s) 2663, 2693, 4140, 4170, 4846, 4876, 5325, 5355
Bsc4I CCNNNNNNNGG 9 cut(s) 1211, 1712, 2492, 3666, 3787, 4259, 4538, 4748, 5268
Bse118I RCCGGY 2 cut(s) 68, 4516
Bse3DI GCAATG 7 cut(s) 112, 659, 924, 1690, 2359, 3057, 3441
Bse8I GATNNNNATC 3 cut(s) 797, 4833, 5555
BseAI TCCGGA 2 cut(s) 1166, 2913
BseCI ATCGAT 1 cut(s) 791
BseDI CCNNGG 7 cut(s) 2216, 3125, 3223, 3786, 4398, 4578, 5469
BseJI GATNNNNATC 3 cut(s) 797, 4833, 5555
BseLI CCNNNNNNNGG 9 cut(s) 1211, 1712, 2492, 3666, 3787, 4259, 4538, 4748, 5268
BseMI GCAATG 7 cut(s) 112, 659, 924, 1690, 2359, 3057, 3441
BseSI GKGCMC 1 cut(s) 2224
BseX3I CGGCCG 1 cut(s) 4514
BseYI CCCAGC 1 cut(s) 3665
BsgI GTGCAG 6 cut(s) 156, 900, 1827, 2808, 3345, 4404
Bsh1236I CGCG 1 cut(s) 4037
Bsh1285I CGRYCG 2 cut(s) 4517, 5584
BshNI GGYRCC 3 cut(s) 2569, 3777, 5258
BshVI ATCGAT 1 cut(s) 791
BsiEI CGRYCG 2 cut(s) 4517, 5584
BsiHKAI GWGCWC 4 cut(s) 2551, 4859, 4872, 5100
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 6 cut(s) 69, 1167, 2914, 3321, 4517, 5521
BslFI GGGAC 8 cut(s) 135, 333, 1323, 1467, 1550, 1703, 2463, 4797
BslI CCNNNNNNNGG 9 cut(s) 1211, 1712, 2492, 3666, 3787, 4259, 4538, 4748, 5268
BsmAI GTCTC 9 cut(s) 514, 747, 1491, 2685, 3065, 4026, 4185, 4350, 4490
BsmBI CGTCTC 2 cut(s) 3065, 4026
BsmFI GGGAC 8 cut(s) 135, 333, 1323, 1467, 1550, 1703, 2463, 4797
BsmI GAATGC 4 cut(s) 720, 830, 3961, 5244
Bso31I GGTCTC 1 cut(s) 747
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 5 cut(s) 2224, 2551, 4859, 4872, 5100
Bsp13I TCCGGA 2 cut(s) 1166, 2913
Bsp1407I TGTACA 2 cut(s) 2541, 3155
Bsp19I CCATGG 2 cut(s) 3125, 5469
BspACI CCGC 5 cut(s) 539, 1331, 2254, 2428, 4513
BspDI ATCGAT 1 cut(s) 791
BspEI TCCGGA 2 cut(s) 1166, 2913
BspFNI CGCG 1 cut(s) 4037
BspMAI CTGCAG 2 cut(s) 385, 3543
BspMI ACCTGC 4 cut(s) 866, 1849, 3690, 3834
BspQI GCTCTTC 1 cut(s) 615
BspT107I GGYRCC 3 cut(s) 2569, 3777, 5258
BspTI CTTAAG 2 cut(s) 1634, 4553
BspTNI GGTCTC 1 cut(s) 747
BsrBI CCGCTC 1 cut(s) 4513
BsrDI GCAATG 7 cut(s) 112, 659, 924, 1690, 2359, 3057, 3441
BsrFI RCCGGY 2 cut(s) 68, 4516
BsrGI TGTACA 2 cut(s) 2541, 3155
BssAI RCCGGY 2 cut(s) 68, 4516
BssECI CCNNGG 7 cut(s) 2216, 3125, 3223, 3786, 4398, 4578, 5469
BssNI GRCGYC 1 cut(s) 3778
BssSI CACGAG 2 cut(s) 3363, 4860
BssT1I CCWWGG 6 cut(s) 2216, 3125, 3223, 3786, 4578, 5469
Bst2BI CACGAG 2 cut(s) 3363, 4860
Bst4CI ACNGT 9 cut(s) 702, 2047, 2104, 2644, 3316, 3554, 4196, 4758, 5582
BstACI GRCGYC 1 cut(s) 3778
BstAFI CTTAAG 2 cut(s) 1634, 4553
BstAUI TGTACA 2 cut(s) 2541, 3155
BstBAI YACGTR 3 cut(s) 407, 3443, 3512
BstC8I GCNNGC 8 cut(s) 66, 2720, 2981, 2985, 3462, 4518, 5184, 5680
BstDSI CCRYGG 2 cut(s) 3125, 5469
BstFNI CGCG 1 cut(s) 4037
BstH2I RGCGCY 4 cut(s) 2767, 3273, 3781, 5467
BstHHI GCGC 6 cut(s) 2766, 2907, 3272, 3780, 4111, 5466
BstMAI GTCTC 9 cut(s) 514, 747, 1491, 2685, 3065, 4026, 4185, 4350, 4490
BstMCI CGRYCG 2 cut(s) 4517, 5584
BstNSI RCATGY 8 cut(s) 893, 994, 1460, 2309, 2456, 2542, 2983, 4215
BstSFI CTRYAG 8 cut(s) 381, 1853, 2643, 3113, 3539, 3603, 4626, 5691
BstSLI GKGCMC 1 cut(s) 2224
BstSNI TACGTA 1 cut(s) 3443
BstUI CGCG 1 cut(s) 4037
BstV2I GAAGAC 3 cut(s) 687, 822, 5174
BstX2I RGATCY 8 cut(s) 190, 1261, 1511, 1885, 4294, 4720, 5473, 5625
BstYI RGATCY 8 cut(s) 190, 1261, 1511, 1885, 4294, 4720, 5473, 5625
BstZI CGGCCG 1 cut(s) 4514
Bsu15I ATCGAT 1 cut(s) 791
BsuI GTATCC 3 cut(s) 1932, 2792, 5606
BsuTUI ATCGAT 1 cut(s) 791
BtgI CCRYGG 2 cut(s) 3125, 5469
BtsI GCAGTG 2 cut(s) 888, 1806
BtsIMutI CAGTG 7 cut(s) 888, 1806, 1844, 2109, 3158, 3312, 4446
BveI ACCTGC 4 cut(s) 866, 1849, 3690, 3834
Cac8I GCNNGC 8 cut(s) 66, 2720, 2981, 2985, 3462, 4518, 5184, 5680
CaiI CAGNNNCTG 1 cut(s) 3332
CfoI GCGC 6 cut(s) 2766, 2907, 3272, 3780, 4111, 5466
Cfr10I RCCGGY 2 cut(s) 68, 4516
ClaI ATCGAT 1 cut(s) 791
CseI GACGC 4 cut(s) 2634, 4043, 4799, 5312
Csp6I GTAC 8 cut(s) 728, 763, 2196, 2542, 3156, 4601, 5316, 5512
CspCI CAANNNNNGTGG 2 cut(s) 3882, 3917
CviQI GTAC 8 cut(s) 728, 763, 2196, 2542, 3156, 4601, 5316, 5512
DinI GGCGCC 1 cut(s) 3779
DraI TTTAAA 2 cut(s) 867, 1674
DrdI GACNNNNNNGTC 2 cut(s) 1335, 4199
DseDI GACNNNNNNGTC 2 cut(s) 1335, 4199
EaeI YGGCCR 3 cut(s) 79, 4514, 4518
EagI CGGCCG 1 cut(s) 4514
Ecl136II GAGCTC 1 cut(s) 5098
EclXI CGGCCG 1 cut(s) 4514
Eco105I TACGTA 1 cut(s) 3443
Eco130I CCWWGG 6 cut(s) 2216, 3125, 3223, 3786, 4578, 5469
Eco24I GRGCYC 1 cut(s) 5100
Eco31I GGTCTC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 7 cut(s) 320, 349, 1169, 1328, 1537, 1976, 3923
Eco47III AGCGCT 1 cut(s) 3271
Eco52I CGGCCG 1 cut(s) 4514
Eco53kI GAGCTC 1 cut(s) 5098
Eco57I CTGAAG 9 cut(s) 611, 2867, 3018, 3518, 3654, 3846, 4434, 5688, 5694
Eco72I CACGTG 1 cut(s) 3512
Eco88I CYCGRG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 5098
EcoO109I RGGNCCY 3 cut(s) 1537, 3220, 4740
EcoRI GAATTC 3 cut(s) 902, 1429, 4330
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 6 cut(s) 2216, 3125, 3223, 3786, 4578, 5469
EcoT22I ATGCAT 1 cut(s) 677
EcoT38I GRGCYC 1 cut(s) 5100
EgeI GGCGCC 1 cut(s) 3779
EheI GGCGCC 1 cut(s) 3779
ErhI CCWWGG 6 cut(s) 2216, 3125, 3223, 3786, 4578, 5469
Esp3I CGTCTC 2 cut(s) 3065, 4026
FalI AAGNNNNNCTT 6 cut(s) 2069, 2101, 2784, 2816, 2976, 3008
FaqI GGGAC 8 cut(s) 135, 333, 1323, 1467, 1550, 1703, 2463, 4797
FbaI TGATCA 3 cut(s) 610, 1084, 2407
FblI GTMKAC 2 cut(s) 2730, 4547
FriOI GRGCYC 1 cut(s) 5100
FseI GGCCGGCC 1 cut(s) 4520
FspBI CTAG 9 cut(s) 1382, 2081, 2726, 3224, 3417, 3653, 3713, 4832, 4968
GlaI GCGC 6 cut(s) 2765, 2906, 3271, 3779, 4110, 5465
GsaI CCCAGC 1 cut(s) 3669
GsuI CTGGAG 5 cut(s) 2283, 4275, 4319, 4512, 5424
HaeII RGCGCY 4 cut(s) 2767, 3273, 3781, 5467
HapII CCGG 6 cut(s) 69, 1167, 2914, 3321, 4517, 5521
HgaI GACGC 4 cut(s) 2634, 4043, 4799, 5312
HhaI GCGC 6 cut(s) 2766, 2907, 3272, 3780, 4111, 5466
Hin1I GRCGYC 1 cut(s) 3778
Hin6I GCGC 6 cut(s) 2764, 2905, 3270, 3778, 4109, 5464
HinP1I GCGC 6 cut(s) 2764, 2905, 3270, 3778, 4109, 5464
HincII GTYRAC 3 cut(s) 2577, 4159, 4461
HindII GTYRAC 3 cut(s) 2577, 4159, 4461
HpaII CCGG 6 cut(s) 69, 1167, 2914, 3321, 4517, 5521
Hpy99I CGWCG 2 cut(s) 2425, 5328
HpyCH4III ACNGT 9 cut(s) 702, 2047, 2104, 2644, 3316, 3554, 4196, 4758, 5582
HpyCH4IV ACGT 5 cut(s) 406, 3442, 3511, 5146, 5541
HpySE526I ACGT 5 cut(s) 406, 3442, 3511, 5146, 5541
Hsp92I GRCGYC 1 cut(s) 3778
HspAI GCGC 6 cut(s) 2764, 2905, 3270, 3778, 4109, 5464
KasI GGCGCC 1 cut(s) 3777
KflI GGGWCCC 1 cut(s) 1537
Kpn2I TCCGGA 2 cut(s) 1166, 2913
KroI GCCGGC 1 cut(s) 4516
KroNI GCCGGC 1 cut(s) 4518
Ksp22I TGATCA 3 cut(s) 610, 1084, 2407
LguI GCTCTTC 1 cut(s) 615
MaeI CTAG 9 cut(s) 1382, 2081, 2726, 3224, 3417, 3653, 3713, 4832, 4968
MaeII ACGT 5 cut(s) 406, 3442, 3511, 5146, 5541
MaeIII GTNAC 9 cut(s) 848, 1136, 1215, 1660, 2796, 3316, 3647, 3846, 5630
MbiI CCGCTC 1 cut(s) 4513
MfeI CAATTG 1 cut(s) 4026
MflI RGATCY 8 cut(s) 190, 1261, 1511, 1885, 4294, 4720, 5473, 5625
MhlI GDGCHC 5 cut(s) 2224, 2551, 4859, 4872, 5100
Mly113I GGCGCC 1 cut(s) 3778
MlyI GAGTC 8 cut(s) 110, 1616, 1657, 1685, 3064, 3601, 4669, 5204
MmeI TCCRAC 4 cut(s) 1278, 2629, 3756, 4667
Mph1103I ATGCAT 1 cut(s) 677
MroI TCCGGA 2 cut(s) 1166, 2913
MroNI GCCGGC 1 cut(s) 4516
MroXI GAANNNNTTC 5 cut(s) 624, 2614, 3328, 4053, 4470
MslI CAYNNNNRTG 4 cut(s) 129, 1060, 1658, 2031
MspA1I CMGCKG 5 cut(s) 242, 3538, 3602, 3824, 3833
MspCI CTTAAG 2 cut(s) 1634, 4553
MspI CCGG 6 cut(s) 69, 1167, 2914, 3321, 4517, 5521
MunI CAATTG 1 cut(s) 4026
Mva1269I GAATGC 4 cut(s) 720, 830, 3961, 5244
MvnI CGCG 1 cut(s) 4037
NaeI GCCGGC 1 cut(s) 4518
NarI GGCGCC 1 cut(s) 3778
NciI CCSGG 1 cut(s) 5522
NcoI CCATGG 2 cut(s) 3125, 5469
NgoMIV GCCGGC 1 cut(s) 4516
NmuCI GTSAC 5 cut(s) 848, 1215, 1660, 3647, 5630
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 8 cut(s) 893, 994, 1460, 2309, 2456, 2542, 2983, 4215
OliI CACNNNNGTG 1 cut(s) 1060
PaeI GCATGC 1 cut(s) 2983
PaqCI CACCTGC 1 cut(s) 866
PciI ACATGT 3 cut(s) 2305, 2452, 2538
PciSI GCTCTTC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 3517
PctI GAATGC 4 cut(s) 720, 830, 3961, 5244
PdiI GCCGGC 1 cut(s) 4518
PdmI GAANNNNTTC 5 cut(s) 624, 2614, 3328, 4053, 4470
PflMI CCANNNNNTGG 1 cut(s) 1712
PfoI TCCNGGA 3 cut(s) 2260, 2683, 4489
PleI GAGTC 8 cut(s) 110, 1616, 1657, 1685, 3063, 3600, 4668, 5204
PluTI GGCGCC 1 cut(s) 3781
PmaCI CACGTG 1 cut(s) 3512
PmlI CACGTG 1 cut(s) 3512
PpsI GAGTC 8 cut(s) 110, 1616, 1657, 1685, 3063, 3600, 4668, 5204
Ppu21I YACGTR 3 cut(s) 407, 3443, 3512
PpuMI RGGWCCY 1 cut(s) 1537
PscI ACATGT 3 cut(s) 2305, 2452, 2538
PshBI ATTAAT 1 cut(s) 1188
PsiI TTATAA 1 cut(s) 1994
Psp124BI GAGCTC 1 cut(s) 5100
Psp5II RGGWCCY 1 cut(s) 1537
PspCI CACGTG 1 cut(s) 3512
PspFI CCCAGC 1 cut(s) 3665
PspPPI RGGWCCY 1 cut(s) 1537
PstI CTGCAG 2 cut(s) 385, 3543
PstNI CAGNNNCTG 1 cut(s) 3332
PsuI RGATCY 8 cut(s) 190, 1261, 1511, 1885, 4294, 4720, 5473, 5625
PvuII CAGCTG 5 cut(s) 242, 3538, 3602, 3824, 3833
RigI GGCCGGCC 1 cut(s) 4520
RsaI GTAC 8 cut(s) 729, 764, 2197, 2543, 3157, 4602, 5317, 5513
RsaNI GTAC 8 cut(s) 728, 763, 2196, 2542, 3156, 4601, 5316, 5512
RseI CAYNNNNRTG 4 cut(s) 129, 1060, 1658, 2031
SacI GAGCTC 1 cut(s) 5100
SapI GCTCTTC 1 cut(s) 615
SchI GAGTC 8 cut(s) 110, 1616, 1657, 1685, 3064, 3601, 4669, 5204
SduI GDGCHC 5 cut(s) 2224, 2551, 4859, 4872, 5100
SfcI CTRYAG 8 cut(s) 381, 1853, 2643, 3113, 3539, 3603, 4626, 5691
SfoI GGCGCC 1 cut(s) 3779
SinI GGWCC 7 cut(s) 320, 349, 1169, 1328, 1537, 1976, 3923
SmiMI CAYNNNNRTG 4 cut(s) 129, 1060, 1658, 2031
SmlI CTYRAG 7 cut(s) 1312, 1634, 1812, 1971, 3002, 3133, 4553
SmoI CTYRAG 7 cut(s) 1312, 1634, 1812, 1971, 3002, 3133, 4553
SnaBI TACGTA 1 cut(s) 3443
SphI GCATGC 1 cut(s) 2983
SsiI CCGC 5 cut(s) 539, 1331, 2254, 2428, 4513
SspDI GGCGCC 1 cut(s) 3777
SspMI CTAG 9 cut(s) 1382, 2081, 2726, 3224, 3417, 3653, 3713, 4832, 4968
SstI GAGCTC 1 cut(s) 5100
StyI CCWWGG 6 cut(s) 2216, 3125, 3223, 3786, 4578, 5469
TaaI ACNGT 9 cut(s) 702, 2047, 2104, 2644, 3316, 3554, 4196, 4758, 5582
TaiI ACGT 5 cut(s) 409, 3445, 3514, 5149, 5544
TatI WGTACW 4 cut(s) 2541, 3155, 5315, 5511
TauI GCSGC 2 cut(s) 2257, 4516
TscAI CASTG 7 cut(s) 888, 1813, 1851, 2109, 3165, 3319, 4446
TseFI GTSAC 5 cut(s) 848, 1215, 1660, 3647, 5630
Tsp45I GTSAC 5 cut(s) 848, 1215, 1660, 3647, 5630
TspGWI ACGGA 6 cut(s) 699, 867, 2281, 2738, 2774, 2953
TspRI CASTG 7 cut(s) 888, 1813, 1851, 2109, 3165, 3319, 4446
Van91I CCANNNNNTGG 1 cut(s) 1712
Vha464I CTTAAG 2 cut(s) 1634, 4553
VpaK11BI GGWCC 7 cut(s) 320, 349, 1169, 1328, 1537, 1976, 3923
VspI ATTAAT 1 cut(s) 1188
XbaI TCTAGA 1 cut(s) 4831
XceI RCATGY 8 cut(s) 893, 994, 1460, 2309, 2456, 2542, 2983, 4215
XcmI CCANNNNNNNNNTGG 1 cut(s) 1914
XmaJI CCTAGG 1 cut(s) 3223
XmiI GTMKAC 2 cut(s) 2730, 4547
XmnI GAANNNNTTC 5 cut(s) 624, 2614, 3328, 4053, 4470
XspI CTAG 9 cut(s) 1382, 2081, 2726, 3224, 3417, 3653, 3713, 4832, 4968
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.