RchiOBHm_Chr2g0097291
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007480
Physical Location & Seq
Forward (+)
9945578 .. 9946888
1311 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGACAGATGCTCCAATCTTAGTGCTTCTTGATTTCAGCAAGGTTTTTGAAGTAGATTGTGATGCTTCGAATGTGGGGATTGGCGCTGTCCTCAGCCAAGAGGGTAAACCTGTTGCTTTTTTCAGTGAGAAGTTGAATCATTCTCGCACCAGGTACTCTACTTATGATAAAGAATTCTATGCCATTATTCGAGCTTTAAATCATTGGAGGCATTATCTTATTTGCAAGGAGTTCATTCTTTTTTCTGATCATGAGGCTTTGAGATTCATTAATGGGCAGCATAAGTTGAATAACAGACATGCTAAATGGGTGGAATTTTTGCAAGCCTATACTTTTCATATCAAGCATAAGTCTGGGAGGTTGAATCAAGTAGCAGATGCATTAAGTAGAAGACATTCCTTTCTCAATACAATGCAAGTTAAAGTTTCAGGGTTTGAAATTCTTAAGGAGCAGTACTCAGAAGATCCATTCTTCAAGCAAATTTGGACTAAATGTTCTAAGGGTCCAGTTGGTTCTTATTTGTTACAAGAAGGCTATCTTTTCAAAGGAAATAGACTCTGCATTCCTGAGGGGTCCTTGCGAGAAAACATAATAACTGAAACTCATGCTGGAGGTTTAGCTGGGCACTTTGGGAGAGATAAAACTCTTTCACTGGTCAAGGAGCATTTTTATTGGCCTCGATTGGAGAGGGATGTTGCTCGACATGTAGAAAGATGTAGAACTTGTCATATGGCCAAATCCCAAGGTCAGAATACAGGGTTGTACACTCCTCTGCCGGTTCCCACAGCTCCTTGGGAAGATGTTAGCCTTGATTTTGTGACAGGTTTGCCCCAGACTCAGAGGAACAAAGATTCAATCATGGTGGTGGTTGATAGATTTTCAAAGATGTCCCATTTCATACCTTGTAATAAAACCAACGATGCTTCTCATGTTGCTGATTTATACTTCAAAGAAGTTGTCAAACTTCATGGCATTCCAAAGACAATCACTTCTGATCGGGATTCGAAATTTGTTGGACATTTTTGGCGCACTTTATGGAGGAAGCTAGGAACCAAGCTACAGTTCACATGGGCAACTTGTTGCGAAGTTTGGTGGGAAAGAATCTTCGTCAGTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

43.23

Weight (kDa)

9.15

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 1 - 79 5.1e-25 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 11 - 110 6.5e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 192 - 247 4.4e-19 Integrase zinc binding domain
rve PF00665 268 - 356 8.8e-08 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 5 cut(s) 173, 314, 438, 480, 1007
AfaI GTAC 3 cut(s) 155, 455, 764
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 703
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AloI GAACNNNNNNTCC 2 cut(s) 478, 510
AluBI AGCT 5 cut(s) 194, 620, 788, 1045, 1057
AluI AGCT 5 cut(s) 194, 620, 788, 1045, 1057
AlwI GGATC 1 cut(s) 458
AoxI GGCC 2 cut(s) 674, 732
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 5 cut(s) 173, 314, 438, 480, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 394
AspLEI GCGC 2 cut(s) 86, 1029
AspS9I GGNCC 2 cut(s) 503, 573
AsuII TTCGAA 2 cut(s) 68, 1004
AvaII GGWCC 2 cut(s) 503, 573
AxyI CCTNAGG 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 1058
BfoI RGCGCY 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 503, 573
BmgT120I GGNCC 2 cut(s) 503, 573
BmiI GGNNCC 4 cut(s) 504, 574, 780, 1051
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 3 cut(s) 52, 367, 910
BpiI GAAGAC 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 92
Bpu14I TTCGAA 2 cut(s) 68, 1004
BsaJI CCNNGG 2 cut(s) 742, 791
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 506, 657
Bse21I CCTNAGG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 742, 791
BseGI GGATG 1 cut(s) 697
BseMII CTCAG 4 cut(s) 106, 471, 558, 851
BseNI ACTGG 2 cut(s) 506, 657
BseRI GAGGAG 1 cut(s) 759
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 620
BshFI GGCC 2 cut(s) 676, 734
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 874
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 2 cut(s) 561, 972
BsnI GGCC 2 cut(s) 676, 734
Bsp119I TTCGAA 2 cut(s) 68, 1004
Bsp1286I GDGCHC 1 cut(s) 627
Bsp1407I TGTACA 1 cut(s) 762
Bsp143I GATC 3 cut(s) 247, 463, 994
BspANI GGCC 2 cut(s) 676, 734
BspCNI CTCAG 4 cut(s) 105, 470, 559, 850
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 504, 574, 780, 1051
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 2 cut(s) 68, 1004
BspTI CTTAAG 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 775
BsrGI TGTACA 1 cut(s) 762
BsrI ACTGG 2 cut(s) 506, 657
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 2 cut(s) 742, 791
BssMI GATC 3 cut(s) 247, 463, 994
BssT1I CCWWGG 2 cut(s) 742, 791
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 1062
BstAFI CTTAAG 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 762
BstBI TTCGAA 2 cut(s) 68, 1004
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 6 cut(s) 19, 92, 457, 498, 567, 837
BstF5I GGATG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 1029
BstKTI GATC 3 cut(s) 250, 466, 997
BstMBI GATC 3 cut(s) 247, 463, 994
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 302, 707
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 1058
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 2 cut(s) 676, 734
BtsCI GGATG 1 cut(s) 697
BtsIMutI CAGTG 3 cut(s) 130, 650, 1117
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 86, 1029
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 2 cut(s) 503, 573
CsiI ACCWGGT 1 cut(s) 149
Csp6I GTAC 3 cut(s) 154, 454, 763
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 8 cut(s) 251, 299, 605, 704, 859, 929, 968, 1068
CviQI GTAC 3 cut(s) 154, 454, 763
DdeI CTNAG 6 cut(s) 19, 92, 457, 498, 567, 837
DpnI GATC 3 cut(s) 249, 465, 996
DpnII GATC 3 cut(s) 247, 463, 994
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 732
Eco130I CCWWGG 2 cut(s) 742, 791
Eco47I GGWCC 2 cut(s) 503, 573
Eco81I CCTNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 742, 791
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 2 cut(s) 742, 791
FaeI CATG 8 cut(s) 254, 302, 608, 707, 862, 932, 971, 1071
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 874
FatI CATG 8 cut(s) 250, 298, 604, 703, 858, 928, 967, 1067
FauNDI CATATG 1 cut(s) 729
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 704
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 1046
GlaI GCGC 2 cut(s) 85, 1028
GluI GCNGC 1 cut(s) 278
GsaI CCCAGC 1 cut(s) 624
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 676, 734
HapII CCGG 1 cut(s) 776
HhaI GCGC 2 cut(s) 86, 1029
Hin1II CATG 8 cut(s) 254, 302, 608, 707, 862, 932, 971, 1071
Hin6I GCGC 2 cut(s) 84, 1027
HinP1I GCGC 2 cut(s) 84, 1027
HinfI GANTC 8 cut(s) 136, 264, 364, 555, 835, 851, 1001, 1101
HpaII CCGG 1 cut(s) 776
Hpy166II GTNNAC 3 cut(s) 107, 765, 1065
Hpy188I TCNGA 5 cut(s) 247, 460, 750, 840, 994
Hpy188III TCNNGA 4 cut(s) 29, 251, 566, 998
Hpy8I GTNNAC 3 cut(s) 107, 765, 1065
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 1062
HpyCH4V TGCA 5 cut(s) 225, 322, 380, 415, 561
HpyF3I CTNAG 6 cut(s) 19, 92, 457, 498, 567, 837
Hsp92II CATG 8 cut(s) 254, 302, 608, 707, 862, 932, 971, 1071
HspAI GCGC 2 cut(s) 84, 1027
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 247, 463, 994
LmnI GCTCC 4 cut(s) 16, 448, 661, 793
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 52, 367, 910
MabI ACCWGGT 1 cut(s) 149
MaeI CTAG 1 cut(s) 1046
MaeIII GTNAC 2 cut(s) 522, 817
MalI GATC 3 cut(s) 249, 465, 996
MboI GATC 3 cut(s) 247, 463, 994
MboII GAAGA 5 cut(s) 402, 463, 473, 809, 1096
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 627
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 5 cut(s) 173, 314, 438, 480, 1007
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 2 cut(s) 549, 829
MmeI TCCRAC 1 cut(s) 994
Mox20I TGGCCA 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 394
MscI TGGCCA 1 cut(s) 734
MseI TTAA 5 cut(s) 197, 270, 383, 420, 444
MslI CAYNNNNRTG 1 cut(s) 863
Msp20I TGGCCA 1 cut(s) 734
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 2 cut(s) 561, 972
MvaI CCWGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 729
NdeII GATC 3 cut(s) 247, 463, 994
NlaIII CATG 8 cut(s) 254, 302, 608, 707, 862, 932, 971, 1071
NlaIV GGNNCC 4 cut(s) 504, 574, 780, 1051
NmuCI GTSAC 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 2 cut(s) 302, 707
NspV TTCGAA 2 cut(s) 68, 1004
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 703
PctI GAATGC 2 cut(s) 561, 972
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 6 cut(s) 136, 264, 364, 851, 1001, 1101
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 2 cut(s) 549, 829
PpsI GAGTC 2 cut(s) 549, 829
PpuMI RGGWCCY 1 cut(s) 573
PscI ACATGT 1 cut(s) 703
PshBI ATTAAT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 4 cut(s) 504, 574, 780, 1051
PspPI GGNCC 2 cut(s) 503, 573
PspPPI RGGWCCY 1 cut(s) 573
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 3 cut(s) 155, 455, 764
RsaNI GTAC 3 cut(s) 154, 454, 763
RseI CAYNNNNRTG 1 cut(s) 863
SaqAI TTAA 5 cut(s) 197, 270, 383, 420, 444
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 3 cut(s) 247, 463, 994
Sau96I GGNCC 2 cut(s) 503, 573
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 549, 829
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 627
SexAI ACCWGGT 1 cut(s) 149
SfaNI GCATC 3 cut(s) 52, 367, 910
SfcI CTRYAG 1 cut(s) 1058
SfuI TTCGAA 2 cut(s) 68, 1004
SinI GGWCC 2 cut(s) 503, 573
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 173, 314, 438, 480, 1007
SspMI CTAG 1 cut(s) 1046
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 742, 791
TaaI ACNGT 1 cut(s) 1062
TaqI TCGA 5 cut(s) 68, 190, 679, 700, 1004
TasI AATT 5 cut(s) 173, 314, 438, 480, 1007
TatI WGTACW 2 cut(s) 453, 762
TfiI GAWTC 6 cut(s) 136, 264, 364, 851, 1001, 1101
Tru1I TTAA 5 cut(s) 197, 270, 383, 420, 444
Tru9I TTAA 5 cut(s) 197, 270, 383, 420, 444
TscAI CASTG 3 cut(s) 130, 657, 1117
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 5 cut(s) 223, 256, 326, 886, 956
TspRI CASTG 3 cut(s) 130, 657, 1117
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 503, 573
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 5 cut(s) 173, 314, 438, 480, 1007
XceI RCATGY 2 cut(s) 302, 707
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 1 cut(s) 1046
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.