RchiOBHm_Chr2g0104891

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002978
Physical Location & Seq
Forward (+)
16158558 .. 16163239
4682 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGGTGAGACCAAGATGTTACCTTGACGTAACCATAGGAGGAGAACCGGAAGGAAGAATCGTCATTGAGCTCTACAACGACGTCGTTCCGAAAACCGCGGAGAATTTCAGAGCGCTGTGCACCGGTGAGAAGGGCATTGCTCCCAACACCGGCGTCCCTCTTCATTTCAAGGGGGTTGGTTTCCACCGCATTATCAAAGGGTTTATGATACAAGGGGGAGACATCTCAGCTGGGAATGGGAGTGGGAGTGGGGGAGAGTCGATTTACGGCTCGAAATTCGAGGATGAGAATTTTGAGATTAAGCATGAGAGGAAGGGGATGGTGTCCATGGCGAATACTGGGCCGGATAGTAATGGCTCACAGTTCTTTATTTCCACTACTCGGACTCCCCATCTGGATGGGAAGCATGTTGTGTTTGGGAGGGTGATTAAGGGAATGGGGGTGGCCAGGTCCATTGAGCATGTGAGTACTAAAGATGATGGGGAGCATTTTCCCACTCAGGAGGTTTTGATTGCGGATTGTGGGGAACTTGCTGAGGGGGCTGATGATGGGGTGTGTAATTTTTTTAAGGATGGGGATGTTTATCCTGATTGGCCCGTTGATCTTGATGCGAAACATGAGGAGATATCTTGGTGGGTTAGTGCTGTGAATGTGATCAAGGCACTTGGAAATGAGCAGTTCAAGAAGCAAGACTATAAGATGGCCCTGAGAAAGTATCGCAAGGCTTTGCGATACTTGGATTTGTGCTGGGAGTTGGAAGATATCAATGAAGAGAACAGCTCCTCTCTGCGGCAGACAAAGTCTCAGATATTTACTAATAGCTCAGCTTGTAGATTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGATACAGACTTTGCATTGCGTGATTGGGAGGACAATGTGAAGGCGTTGTTTCGCCAAGGCCAGACATATATGGCACTAAATGACATCGACTCTGCGGTTGAAAGCTTCAAGAAGGCACTGGAATTGGAACCAAATGATGGGGGAATTAAGAAAGAGCTTCTGGTTGCTAAAAAGAAGGTAGCTGATAGGAGTGAGAGAGAAAAGAGAGCATATTCTCGAATGTTTAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

366

Amino Acids

40.88

Weight (kDa)

5.54

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 175 2.8e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1 PF00515 302 - 335 2e-08 Tetratricopeptide repeat
TPR_2 PF07719 303 - 335 1.2e-07 Tetratricopeptide repeat
TPR_8 PF13181 303 - 335 1.7e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 96, 98, 187, 515, 790, 962
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 3 cut(s) 103, 275, 289
AcyI GRCGYC 2 cut(s) 81, 153
AfaI GTAC 1 cut(s) 469
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 149, 381, 789, 1004
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 5 cut(s) 169, 682, 838, 968, 976
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 8 cut(s) 70, 230, 780, 822, 827, 972, 1024, 1049
AluI AGCT 8 cut(s) 70, 230, 780, 822, 827, 972, 1024, 1049
Alw21I GWGCWC 2 cut(s) 72, 122
Alw26I GTCTC 3 cut(s) 213, 807, 840
Alw44I GTGCAC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 5 cut(s) 341, 444, 593, 702, 925
ApaLI GTGCAC 1 cut(s) 118
ApoI RAATTY 3 cut(s) 103, 275, 289
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 4 cut(s) 341, 450, 594, 703
AsuHPI GGTGA 3 cut(s) 16, 137, 436
AvaII GGWCC 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 72, 122
BbvCI CCTCAGC 1 cut(s) 534
BccI CCATC 8 cut(s) 313, 392, 399, 473, 542, 566, 694, 998
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 448
BciVI GTATCC 1 cut(s) 862
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 3 cut(s) 213, 807, 840
BfaI CTAG 1 cut(s) 851
BfoI RGCGCY 1 cut(s) 116
BfuI GTATCC 1 cut(s) 862
BisI GCNGC 1 cut(s) 791
BlpI GCTNAGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 792
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 4 cut(s) 341, 450, 594, 703
BmiI GGNNCC 1 cut(s) 996
BmrFI CCNGG 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 764, 796
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 823
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 81, 153
BsaI GGTCTC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 96, 327, 922
BsaWI WCCGGW 2 cut(s) 46, 122
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 370, 400
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 381, 789, 1004
Bse118I RCCGGY 2 cut(s) 122, 149
Bse1I ACTGG 2 cut(s) 343, 990
Bse3DI GCAATG 2 cut(s) 135, 881
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 3 cut(s) 96, 327, 922
BseGI GGATG 5 cut(s) 289, 324, 403, 577, 583
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 4 cut(s) 149, 381, 789, 1004
BseMI GCAATG 2 cut(s) 135, 881
BseMII CTCAG 6 cut(s) 240, 512, 525, 698, 818, 837
BseNI ACTGG 2 cut(s) 343, 990
BseRI GAGGAG 3 cut(s) 54, 635, 772
BseSI GKGCMC 1 cut(s) 122
BseYI CCCAGC 2 cut(s) 230, 747
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 5 cut(s) 343, 446, 595, 704, 927
BshTI ACCGGT 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 72, 122
BsiSI CCGG 4 cut(s) 47, 123, 150, 344
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 4 cut(s) 149, 381, 789, 1004
BsmAI GTCTC 3 cut(s) 213, 807, 840
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 5 cut(s) 343, 446, 595, 704, 927
Bso31I GGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 72, 122
Bsp143I GATC 2 cut(s) 601, 654
Bsp1720I GCTNAGC 1 cut(s) 823
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 6 cut(s) 96, 98, 187, 515, 790, 962
BspANI GGCC 5 cut(s) 343, 446, 595, 704, 927
BspCNI CTCAG 6 cut(s) 239, 511, 526, 699, 817, 836
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 996
BspTNI GGTCTC 1 cut(s) 840
BsrDI GCAATG 2 cut(s) 135, 881
BsrFI RCCGGY 2 cut(s) 122, 149
BsrI ACTGG 2 cut(s) 343, 990
BssAI RCCGGY 2 cut(s) 122, 149
BssECI CCNNGG 3 cut(s) 96, 327, 922
BssMI GATC 2 cut(s) 601, 654
BssNI GRCGYC 2 cut(s) 81, 153
BssT1I CCWWGG 2 cut(s) 327, 922
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 363
Bst6I CTCTTC 2 cut(s) 165, 765
BstACI GRCGYC 2 cut(s) 81, 153
BstDEI CTNAG 6 cut(s) 226, 498, 534, 707, 804, 823
BstDSI CCRYGG 2 cut(s) 96, 327
BstF5I GGATG 5 cut(s) 289, 324, 403, 577, 583
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 604, 657
BstMAI GTCTC 3 cut(s) 213, 807, 840
BstMBI GATC 2 cut(s) 601, 654
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 2 cut(s) 410, 464
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 5 cut(s) 343, 446, 595, 704, 927
BtgI CCRYGG 2 cut(s) 96, 327
BtsCI GGATG 5 cut(s) 289, 324, 403, 577, 583
BtsIMutI CAGTG 1 cut(s) 983
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 122, 149
Cfr13I GGNCC 4 cut(s) 341, 450, 594, 703
Cfr42I CCGCGG 1 cut(s) 99
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 468
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 5 cut(s) 305, 328, 407, 461, 617
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 6 cut(s) 226, 498, 534, 707, 804, 823
DpnI GATC 2 cut(s) 603, 656
DpnII GATC 2 cut(s) 601, 654
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 165, 765
EarI CTCTTC 2 cut(s) 165, 765
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 327, 922
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 840
Eco32I GATATC 2 cut(s) 627, 763
Eco47I GGWCC 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 446
EcoRV GATATC 2 cut(s) 627, 763
EcoT14I CCWWGG 2 cut(s) 327, 922
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 327, 922
FaeI CATG 5 cut(s) 308, 331, 410, 464, 620
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 304, 327, 406, 460, 616
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 1 cut(s) 791
FokI GGATG 5 cut(s) 296, 331, 410, 584, 590
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 791
FspBI CTAG 1 cut(s) 851
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 791
GsaI CCCAGC 2 cut(s) 234, 751
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 5 cut(s) 343, 446, 595, 704, 927
HapII CCGG 4 cut(s) 47, 123, 150, 344
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 2 cut(s) 81, 153
Hin1II CATG 5 cut(s) 308, 331, 410, 464, 620
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 970
HinfI GANTC 4 cut(s) 57, 257, 385, 956
HpaII CCGG 4 cut(s) 47, 123, 150, 344
HphI GGTGA 3 cut(s) 16, 137, 436
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 90, 110, 384, 807
Hpy188III TCNNGA 7 cut(s) 395, 500, 587, 605, 682, 976, 1083
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 7 cut(s) 44, 124, 307, 848, 901, 973, 1036
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 2 cut(s) 27, 81
HpyCH4V TGCA 2 cut(s) 120, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 6 cut(s) 226, 498, 534, 707, 804, 823
HpySE526I ACGT 2 cut(s) 27, 81
Hsp92I GRCGYC 2 cut(s) 81, 153
Hsp92II CATG 5 cut(s) 308, 331, 410, 464, 620
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 654
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 2 cut(s) 601, 654
LmnI GCTCC 4 cut(s) 145, 484, 785, 857
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 851
MaeII ACGT 2 cut(s) 27, 81
MaeIII GTNAC 2 cut(s) 17, 28
MalI GATC 2 cut(s) 603, 656
MboI GATC 2 cut(s) 601, 654
MboII GAAGA 4 cut(s) 66, 152, 770, 782
MhlI GDGCHC 2 cut(s) 72, 122
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 7 cut(s) 103, 275, 289, 559, 839, 989, 1011
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 3 cut(s) 266, 379, 950
MmeI TCCRAC 2 cut(s) 735, 846
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 5 cut(s) 300, 429, 567, 1014, 1092
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 98, 230
MspI CCGG 4 cut(s) 47, 123, 150, 344
MspR9I CCNGG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 539
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 601, 654
NlaIII CATG 5 cut(s) 308, 331, 410, 464, 620
NlaIV GGNNCC 1 cut(s) 996
NspI RCATGY 2 cut(s) 410, 464
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 799
PflMI CCANNNNNTGG 1 cut(s) 1004
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 1 cut(s) 792
PleI GAGTC 3 cut(s) 265, 379, 950
PpsI GAGTC 3 cut(s) 265, 379, 950
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 446
PspFI CCCAGC 2 cut(s) 230, 747
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 996
PspPI GGNCC 4 cut(s) 341, 450, 594, 703
PsyI GACNNNGTC 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 72
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 5 cut(s) 300, 429, 567, 1014, 1092
SatI GCNGC 1 cut(s) 791
Sau3AI GATC 2 cut(s) 601, 654
Sau96I GGNCC 4 cut(s) 341, 450, 594, 703
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 3 cut(s) 266, 379, 950
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 2 cut(s) 72, 122
SfaNI GCATC 1 cut(s) 598
Sfr303I CCGCGG 1 cut(s) 99
SgrAI CRCCGGYG 2 cut(s) 122, 149
SgrBI CCGCGG 1 cut(s) 99
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 7 cut(s) 103, 275, 289, 559, 839, 989, 1011
SsiI CCGC 6 cut(s) 96, 98, 187, 515, 790, 962
SspMI CTAG 1 cut(s) 851
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 446
StyI CCWWGG 2 cut(s) 327, 922
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 2 cut(s) 30, 84
TaqI TCGA 5 cut(s) 260, 272, 279, 954, 1084
TasI AATT 7 cut(s) 103, 275, 289, 559, 839, 989, 1011
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 5 cut(s) 300, 429, 567, 1014, 1092
Tru9I TTAA 5 cut(s) 300, 429, 567, 1014, 1092
TscAI CASTG 1 cut(s) 990
TspDTI ATGAA 2 cut(s) 152, 783
TspRI CASTG 1 cut(s) 990
Tth111I GACNNNGTC 1 cut(s) 799
Van91I CCANNNNNTGG 1 cut(s) 1004
VneI GTGCAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 3 cut(s) 103, 275, 289
XceI RCATGY 2 cut(s) 410, 464
XspI CTAG 1 cut(s) 851
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.