Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

44696510 .. 44702456

Gene Structure 5947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGAAGATTCTGGCAATTGAGAAGCTTCCAAGGTTTCCACATACCATAATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAGGAGTGCCTGCTAAATAAAAATAGGAACCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

46

Amino Acids

5.13

Weight (kDa)

6.02

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	2 - 44	5e-15	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
BccI	CCATC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	1 cut(s)	25
CviKI_1	RGCY	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	1 cut(s)	74
FaiI	YATR	3 cut(s)	42, 47, 72
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	50, 77
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	74
LpnPI	CCDG	1 cut(s)	125
LweI	GCATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	15
MluCI	AATT	3 cut(s)	15, 48, 135
MnlI	CCTC	2 cut(s)	97, 104
MslI	CAYNNNNRTG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	15
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	75
SetI	ASST	4 cut(s)	27, 35, 61, 135
SfaNI	GCATC	1 cut(s)	75
SgeI	CNNG	6 cut(s)	23, 42, 65, 83, 102, 124
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	15, 48, 135
StyI	CCWWGG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	15, 48, 135
TfiI	GAWTC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.