RchiOBHm_Chr2g0143371

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004376
Physical Location & Seq
Forward (+)
61062998 .. 61067652
4655 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGGAGGTTGATACCGATCGCAGTGAACATCAGTATGAAGAAGAATATGTATTGCTTGATCTTGGTTCAGTTTCCTCCCAGCTTCAGATACCAGCAAACGCACCGTATGTTCTTTCTGGTTTAGACACAACGCATCCGGTACTGATTATAAATGACAAATTGAAGTTGAATGGAAAATGGGACGAAGCTATTGGAACCTGCCTTATTTTCAAAGAAGGTGCTAGTTCTGTAATTCATGAAGAAACAGGATTGTCGGCAAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

88

Amino Acids

9.63

Weight (kDa)

4.36

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 13 - 75 2.1e-16 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 3 cut(s) 163, 169, 211
AluBI AGCT 2 cut(s) 82, 188
AluI AGCT 2 cut(s) 82, 188
BfaI CTAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 16, 58
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 206
BssMI GATC 2 cut(s) 16, 58
Bst4CI ACNGT 1 cut(s) 105
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 2 cut(s) 19, 61
BstMBI GATC 2 cut(s) 16, 58
BstMCI CGRYCG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 206
CciI TCATGA 1 cut(s) 235
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 236
CviJI RGCY 2 cut(s) 82, 188
CviKI_1 RGCY 2 cut(s) 82, 188
CviQI GTAC 1 cut(s) 140
DpnI GATC 2 cut(s) 18, 60
DpnII GATC 2 cut(s) 16, 58
Eco57I CTGAAG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 1 cut(s) 239
FaiI YATR 6 cut(s) 36, 48, 108, 149, 237, 265
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 235
FokI GGATG 1 cut(s) 120
FspBI CTAG 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 82
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 239
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 263
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 16, 58
LpnPI CCDG 6 cut(s) 92, 102, 105, 150, 211, 231
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 222
MalI GATC 2 cut(s) 18, 60
MboI GATC 2 cut(s) 16, 58
MboII GAAGA 3 cut(s) 50, 53, 251
MluCI AATT 2 cut(s) 158, 231
MnlI CCTC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 265
MslI CAYNNNNRTG 1 cut(s) 33
MspI CCGG 1 cut(s) 137
NdeII GATC 2 cut(s) 16, 58
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 265
PagI TCATGA 1 cut(s) 235
Ple19I CGATCG 1 cut(s) 19
PsiI TTATAA 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 19
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 33
Sau3AI GATC 2 cut(s) 16, 58
SetI ASST 5 cut(s) 9, 84, 190, 200, 220
SfaNI GCATC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 2 cut(s) 158, 231
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 105
TasI AATT 2 cut(s) 158, 231
TscAI CASTG 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 51, 224, 252
TspRI CASTG 1 cut(s) 28
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.