RchiOBHm_Chr2g0148991

Polygalacturonase QRT3-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
66834180 .. 66836292
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1461 bp
ATGATGCCCAGAAATGCTATTGCTACGTTAGTGAAACTGTTGATGGGATTTCTGTGCATAACTGTATTTCATTTCAATTACGGAGAAAGCTCATACCCAGGTGATGCAGGTACTCATGGCAGCACTTATTACCAGGACCCAATAAGGCGCATGGCTTTGATGAAGGCTTCATTACATAACCTCCGCACTGTTGCCGTCTCTAGTCCTCAAGGATCATCATCATCACGTGTTCATCACGCGACTGAGTATGGTGCTGACCCGACCGGAATATCGGACAGCACCGAAGCACTCCAGCAAGCTATTTCTGATGCCTTCATATCTCGTATTGAAGGGGCACACTTGATGGAGGGTATTGCTGATCTTGGAGGCACTCAGCTTCATCTTGATGGAGGGACATACAAGATCAGCCGTCCGTTGCGTTTACCAGATACCACCGGTGCAGGAAACTTTATGATATATGGTGGATCCCTTCTCGCATCCGACAATTTTCCGAACGACCGCCATCTGATCGAGTTGTGGTCAGAGTCAAACTCTTTCAAGTACGAGGACATTACGCTCAAGGACCTTATGATAAACTCAAATTTCAGAGGTGGTGGAATTGCAATTATTAATTCACTAAGGACTACTATAGATAATTGCTACATATCAAGTTTCACTAGCAATGGCATACTAATCCACGGTGGCCATGAAACATTTGTTAGAAACTCCTTCATCGGCCAACACAGCAACGTTGGCGGTGACCATCGTGAAAAGCATTTTTCCGGCATTGGAATTGACATTAACGGGAATGACAATGCAGTTACCGATGTGATTATTTTCTCGGCAGCGGTCGGCATAATGGTACGAGGACAAGCCAATATTCTCACCGGGGTGCATTGTTATAACAAGGCCACCGGATGGGGTGGGATTGGAATTCATATTCGGTCACCCGGGTTGACCCAAACCCGGATTTTGAATTCCTATTTTGATTTCACGGGGATCGTGGCCGAGGACCCCGTCCAGCTCCATATATCCGGATCATTCTTCTTAGGCAATGCCTTTGTTTTGATAAAATCCTTGAAGGGTGTGATTTCTGGGCTAACCATTGTCGACAATATGTTCGCAGGTGATTATACTGGTACGCAAATAGTCCAATTTGATCAATCAAATGGACAATATTTCACCACTATTGATCAAGTTGTGGTAGATCGAAATGTAGTACGTGGTATGATCCTTAAATCGACGGTGGCTAAGGGGTCAAAGTGGAGTAACGGGACAAAGTGGACAGTTGATTTCTCAGAAGTCCTCCTTTTCCCCGACCTGATACAAAATGTCCAATACACATTGCAGGCAAGTGCATCATTTCCAAACCATATTCTACGGAATGTGAGTCACAACCGTGTCACGGTAGAAACAGATGTGCCTGTATCAGCGACGTTGCATGTATTAGTGGATCAAAGCATGCTTGGCTATGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

52.85

Weight (kDa)

6.15

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AarI CACCTGC 1 cut(s) 1094
Acc36I ACCTGC 2 cut(s) 98, 1094
AccB7I CCANNNNNTGG 1 cut(s) 897
AccI GTMKAC 1 cut(s) 1089
AccII CGCG 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 1013
AciI CCGC 4 cut(s) 184, 499, 735, 827
AclI AACGTT 1 cut(s) 729
AclWI GGATC 7 cut(s) 220, 459, 472, 986, 1024, 1204, 1440
AcoI YGGCCR 3 cut(s) 682, 715, 984
AcsI RAATTY 3 cut(s) 580, 912, 955
AcvI CACGTG 1 cut(s) 227
AfaI GTAC 5 cut(s) 112, 542, 843, 1120, 1200
AfiI CCNNNNNNNGG 3 cut(s) 897, 945, 1384
AflIII ACRYGT 1 cut(s) 226
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 5 cut(s) 76, 329, 538, 955, 1060
AjnI CCWGG 2 cut(s) 97, 132
AleI CACNNNNGTG 2 cut(s) 869, 1377
AluBI AGCT 4 cut(s) 90, 299, 376, 1003
AluI AGCT 4 cut(s) 90, 299, 376, 1003
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 7 cut(s) 220, 459, 472, 986, 1024, 1204, 1440
Ama87I CYCGRG 1 cut(s) 929
Aor13HI TCCGGA 1 cut(s) 1013
AoxI GGCC 4 cut(s) 682, 715, 888, 984
ApeKI GCWGC 2 cut(s) 120, 824
ApoI RAATTY 3 cut(s) 580, 912, 955
ArsI GACNNNNNNTTYG 2 cut(s) 1082, 1114
AseI ATTAAT 1 cut(s) 609
AsiGI ACCGGT 1 cut(s) 434
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 3 cut(s) 136, 562, 991
AsuC2I CCSGG 4 cut(s) 868, 930, 931, 946
AsuHPI GGTGA 6 cut(s) 113, 749, 856, 918, 1118, 1153
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 3 cut(s) 136, 562, 991
BaeGI GKGCMC 1 cut(s) 337
BalI TGGCCA 1 cut(s) 684
BamHI GGATCC 1 cut(s) 464
BbrPI CACGTG 1 cut(s) 227
BbvI GCAGC 2 cut(s) 132, 836
BccI CCATC 6 cut(s) 37, 337, 380, 510, 750, 891
BceAI ACGGC 2 cut(s) 179, 393
BciT130I CCWGG 2 cut(s) 99, 134
BclI TGATCA 2 cut(s) 1138, 1171
BcnI CCSGG 4 cut(s) 868, 930, 931, 946
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 201, 657
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 2 cut(s) 98, 1094
BisI GCNGC 2 cut(s) 121, 825
BlsI GCNGC 2 cut(s) 122, 826
Bme1390I CCNGG 6 cut(s) 99, 134, 868, 930, 931, 946
Bme18I GGWCC 3 cut(s) 136, 562, 991
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 3 cut(s) 136, 562, 991
BmiI GGNNCC 3 cut(s) 138, 466, 993
BmrFI CCNGG 6 cut(s) 99, 134, 868, 930, 931, 946
BmsI GCATC 4 cut(s) 94, 298, 485, 1346
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 1230
BpuEI CTTGAG 2 cut(s) 192, 542
BpuMI CCSGG 4 cut(s) 868, 930, 931, 946
BsaAI YACGTR 2 cut(s) 227, 1202
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 5 cut(s) 97, 676, 867, 929, 987
BsaWI WCCGGW 4 cut(s) 263, 434, 893, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 897, 945, 1384
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 1120
Bse3DI GCAATG 3 cut(s) 667, 1039, 1322
Bse8I GATNNNNATC 1 cut(s) 217
BseAI TCCGGA 1 cut(s) 1013
BseBI CCWGG 2 cut(s) 99, 134
BseDI CCNNGG 5 cut(s) 97, 676, 867, 929, 987
BseGI GGATG 2 cut(s) 476, 902
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 897, 945, 1384
BseMI GCAATG 3 cut(s) 667, 1039, 1322
BseMII CTCAG 3 cut(s) 234, 386, 1290
BseNI ACTGG 1 cut(s) 1120
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 132, 836
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 3 cut(s) 264, 499, 831
BshFI GGCC 4 cut(s) 684, 717, 890, 986
BshTI ACCGGT 1 cut(s) 434
BsiEI CGRYCG 3 cut(s) 264, 499, 831
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 8 cut(s) 264, 435, 762, 867, 894, 930, 946, 1014
BslFI GGGAC 2 cut(s) 406, 1267
BslI CCNNNNNNNGG 3 cut(s) 897, 945, 1384
BsmAI GTCTC 1 cut(s) 202
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 406, 1267
BsnI GGCC 4 cut(s) 684, 717, 890, 986
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 337
Bsp13I TCCGGA 1 cut(s) 1013
BspACI CCGC 4 cut(s) 184, 499, 735, 827
BspANI GGCC 4 cut(s) 684, 717, 890, 986
BspCNI CTCAG 3 cut(s) 235, 385, 1289
BspEI TCCGGA 1 cut(s) 1013
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 3 cut(s) 138, 466, 993
BspMI ACCTGC 2 cut(s) 98, 1094
BspPI GGATC 7 cut(s) 220, 459, 472, 986, 1024, 1204, 1440
BsrDI GCAATG 3 cut(s) 667, 1039, 1322
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 1 cut(s) 1120
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 5 cut(s) 97, 676, 867, 929, 987
Bst2UI CCWGG 2 cut(s) 99, 134
Bst4CI ACNGT 8 cut(s) 39, 64, 190, 680, 1225, 1267, 1379, 1387
BstBAI YACGTR 2 cut(s) 227, 1202
BstC8I GCNNGC 3 cut(s) 297, 1329, 1442
BstDEI CTNAG 6 cut(s) 243, 372, 617, 1027, 1230, 1276
BstDSI CCRYGG 1 cut(s) 676
BstEII GGTNACC 2 cut(s) 737, 924
BstF5I GGATG 2 cut(s) 476, 902
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 202
BstMCI CGRYCG 3 cut(s) 264, 499, 831
BstMWI GCNNNNNNNGC 3 cut(s) 723, 732, 1446
BstNI CCWGG 2 cut(s) 99, 134
BstNSI RCATGY 2 cut(s) 1424, 1444
BstPI GGTNACC 2 cut(s) 737, 924
BstSCI CCNGG 6 cut(s) 97, 132, 866, 928, 929, 944
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 132, 836
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 4 cut(s) 684, 717, 890, 986
BtgI CCRYGG 1 cut(s) 676
BtsCI GGATG 2 cut(s) 476, 902
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 2 cut(s) 98, 1094
Cac8I GCNNGC 3 cut(s) 297, 1329, 1442
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 136, 562, 991
Cfr9I CCCGGG 1 cut(s) 929
Csp6I GTAC 5 cut(s) 111, 541, 842, 1119, 1199
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 5 cut(s) 116, 151, 686, 1421, 1441
CviQI GTAC 5 cut(s) 111, 541, 842, 1119, 1199
DdeI CTNAG 6 cut(s) 243, 372, 617, 1027, 1230, 1276
EaeI YGGCCR 3 cut(s) 682, 715, 984
Eco47I GGWCC 3 cut(s) 136, 562, 991
Eco72I CACGTG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 929
Eco91I GGTNACC 2 cut(s) 737, 924
EcoO109I RGGNCCY 3 cut(s) 136, 562, 991
EcoO65I GGTNACC 2 cut(s) 737, 924
EcoRI GAATTC 2 cut(s) 912, 955
EcoRII CCWGG 2 cut(s) 97, 132
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 5 cut(s) 119, 154, 689, 1424, 1444
FalI AAGNNNNNCTT 2 cut(s) 1272, 1304
FaqI GGGAC 2 cut(s) 406, 1267
FatI CATG 5 cut(s) 115, 150, 685, 1420, 1440
FbaI TGATCA 2 cut(s) 1138, 1171
FblI GTMKAC 1 cut(s) 1089
Fnu4HI GCNGC 2 cut(s) 121, 825
FokI GGATG 2 cut(s) 463, 909
Fsp4HI GCNGC 2 cut(s) 121, 825
FspBI CTAG 2 cut(s) 201, 657
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 121, 825
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 4 cut(s) 684, 717, 890, 986
HapII CCGG 8 cut(s) 264, 435, 762, 867, 894, 930, 946, 1014
HhaI GCGC 1 cut(s) 150
Hin1II CATG 5 cut(s) 119, 154, 689, 1424, 1444
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 2 cut(s) 936, 1090
HindII GTYRAC 2 cut(s) 936, 1090
HinfI GANTC 2 cut(s) 524, 1369
HpaII CCGG 8 cut(s) 264, 435, 762, 867, 894, 930, 946, 1014
HphI GGTGA 6 cut(s) 113, 749, 856, 918, 1118, 1153
Hpy166II GTNNAC 4 cut(s) 422, 936, 1090, 1263
Hpy188I TCNGA 8 cut(s) 274, 307, 481, 492, 507, 523, 587, 1279
Hpy188III TCNNGA 3 cut(s) 383, 746, 1014
Hpy8I GTNNAC 4 cut(s) 422, 936, 1090, 1263
Hpy99I CGWCG 2 cut(s) 1225, 1417
HpyAV CCTTC 6 cut(s) 157, 322, 323, 479, 718, 1054
HpyCH4III ACNGT 8 cut(s) 39, 64, 190, 680, 1225, 1267, 1379, 1387
HpyCH4IV ACGT 5 cut(s) 26, 226, 729, 1201, 1415
HpyCH4V TGCA 9 cut(s) 57, 107, 440, 602, 797, 874, 1327, 1337, 1420
HpyF10VI GCNNNNNNNGC 3 cut(s) 723, 732, 1446
HpyF3I CTNAG 6 cut(s) 243, 372, 617, 1027, 1230, 1276
HpySE526I ACGT 5 cut(s) 26, 226, 729, 1201, 1415
Hsp92II CATG 5 cut(s) 119, 154, 689, 1424, 1444
HspAI GCGC 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 1013
Ksp22I TGATCA 2 cut(s) 1138, 1171
LmnI GCTCC 1 cut(s) 1008
Lsp1109I GCAGC 2 cut(s) 132, 836
LweI GCATC 4 cut(s) 94, 298, 485, 1346
MaeI CTAG 2 cut(s) 201, 657
MaeII ACGT 5 cut(s) 26, 226, 729, 1201, 1415
MaeIII GTNAC 6 cut(s) 737, 799, 924, 1247, 1370, 1381
MboII GAAGA 1 cut(s) 1015
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 2 cut(s) 533, 1378
MmeI TCCRAC 1 cut(s) 504
Mox20I TGGCCA 1 cut(s) 684
MroI TCCGGA 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 684
MseI TTAA 3 cut(s) 609, 780, 1215
MslI CAYNNNNRTG 3 cut(s) 384, 869, 1377
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 8 cut(s) 264, 435, 762, 867, 894, 930, 946, 1014
MspR9I CCNGG 6 cut(s) 99, 134, 868, 930, 931, 946
MvaI CCWGG 2 cut(s) 99, 134
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 723, 732, 1446
NciI CCSGG 4 cut(s) 868, 930, 931, 946
NlaIII CATG 5 cut(s) 119, 154, 689, 1424, 1444
NlaIV GGNNCC 3 cut(s) 138, 466, 993
NmeAIII GCCGAG 2 cut(s) 800, 1012
NmuCI GTSAC 4 cut(s) 737, 924, 1370, 1381
NspI RCATGY 2 cut(s) 1424, 1444
OliI CACNNNNGTG 2 cut(s) 869, 1377
PaeI GCATGC 1 cut(s) 1444
PaqCI CACCTGC 1 cut(s) 1094
PflFI GACNNNGTC 1 cut(s) 995
PflMI CCANNNNNTGG 1 cut(s) 897
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 2 cut(s) 122, 826
PleI GAGTC 2 cut(s) 532, 1377
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 2 cut(s) 532, 1377
Ppu21I YACGTR 2 cut(s) 227, 1202
PpuMI RGGWCCY 3 cut(s) 136, 562, 991
PshBI ATTAAT 1 cut(s) 609
PsiI TTATAA 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 729
Psp5II RGGWCCY 3 cut(s) 136, 562, 991
Psp6I CCWGG 2 cut(s) 97, 132
PspCI CACGTG 1 cut(s) 227
PspEI GGTNACC 2 cut(s) 737, 924
PspGI CCWGG 2 cut(s) 97, 132
PspN4I GGNNCC 3 cut(s) 138, 466, 993
PspPI GGNCC 3 cut(s) 136, 562, 991
PspPPI RGGWCCY 3 cut(s) 136, 562, 991
PsuI RGATCY 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 5 cut(s) 112, 542, 843, 1120, 1200
RsaNI GTAC 5 cut(s) 111, 541, 842, 1119, 1199
RseI CAYNNNNRTG 3 cut(s) 384, 869, 1377
SalI GTCGAC 1 cut(s) 1088
SaqAI TTAA 3 cut(s) 609, 780, 1215
SatI GCNGC 2 cut(s) 121, 825
Sau96I GGNCC 3 cut(s) 136, 562, 991
SchI GAGTC 2 cut(s) 533, 1378
ScrFI CCNGG 6 cut(s) 99, 134, 868, 930, 931, 946
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 4 cut(s) 94, 298, 485, 1346
SfcI CTRYAG 1 cut(s) 627
SgrAI CRCCGGYG 1 cut(s) 434
SinI GGWCC 3 cut(s) 136, 562, 991
SmaI CCCGGG 1 cut(s) 931
SmiMI CAYNNNNRTG 3 cut(s) 384, 869, 1377
SmlI CTYRAG 2 cut(s) 207, 557
SmoI CTYRAG 2 cut(s) 207, 557
SphI GCATGC 1 cut(s) 1444
SsiI CCGC 4 cut(s) 184, 499, 735, 827
SspI AATATT 2 cut(s) 859, 1157
SspMI CTAG 2 cut(s) 201, 657
StyD4I CCNGG 6 cut(s) 97, 132, 866, 928, 929, 944
TaaI ACNGT 8 cut(s) 39, 64, 190, 680, 1225, 1267, 1379, 1387
TaiI ACGT 5 cut(s) 29, 229, 732, 1204, 1418
TaqI TCGA 4 cut(s) 510, 1089, 1189, 1220
TaqII GACCGA 1 cut(s) 912
Tru1I TTAA 3 cut(s) 609, 780, 1215
Tru9I TTAA 3 cut(s) 609, 780, 1215
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 4 cut(s) 737, 924, 1370, 1381
TseI GCWGC 2 cut(s) 120, 824
Tsp45I GTSAC 4 cut(s) 737, 924, 1370, 1381
TspDTI ATGAA 9 cut(s) 59, 159, 176, 221, 304, 368, 700, 702, 905
TspGWI ACGGA 3 cut(s) 96, 402, 1375
TspMI CCCGGG 1 cut(s) 929
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 995
Van91I CCANNNNNTGG 1 cut(s) 897
VpaK11BI GGWCC 3 cut(s) 136, 562, 991
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 3 cut(s) 580, 912, 955
XceI RCATGY 2 cut(s) 1424, 1444
XmaI CCCGGG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 2 cut(s) 201, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.